Issues - neuro-sig/NeuroFedora

#563 State of python packages that use nodejs/npm (bokeh/plotly)

1

Opened a month ago by ankursinha. Modified a month ago

D: Normal S: Next meeting T: Software S: WIP Normal

#561 Package dabest: Data Analysis and Visualization using Bootstrap-Coupled Estimation

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis good first issue S: Needs packaging T: Software Normal

#560 Package vispy: high-performance interactive 2D/3D data visualization library

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Normal F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#559 Package pydapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Easy F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#558 Package pyomexmeta: Python bindings for libOmexMeta, a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

1

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Hard F: Computational neuroscience F: Utilities S: Needs packaging T: Software Normal

#557 Package SWC_BATCH_CHECK: Provides methods for batch validating data in SWC neuron morphology files

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Easy F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#556 Package sciris: Fast, flexible tools to simplify scientific Python

Opened 4 months ago by ankursinha. Modified 4 months ago

D: Easy F: Utilities good first issue S: Needs packaging T: Software Normal

#555 Package AstroVascPy

Opened 5 months ago by ankursinha. Modified 5 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#554 Package neurodamus: BBP Simulation Control application for Neuron

Opened 5 months ago by ankursinha. Modified 5 months ago

D: Normal F: Computational neuroscience T: Software S: Needs packaging Normal

#553 Package Grape: GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluation

2

Opened 6 months ago by ankursinha. Modified 6 months ago

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software F: Data Analysis good first issue Normal

#550 Package PHATE: Visualizing Transitions and Structure for Biological Data Exploration

1

Opened 6 months ago by ankursinha. Modified 6 months ago

D: Easy F: Data Analysis good first issue S: Needs packaging T: Software Normal

#547 Package MouseLand/rastermap: A multi-dimensional embedding algorithm

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#546 Package sanpy: software for whole-cell current clamp analysis

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Data Analysis F: Neuroimaging good first issue S: Needs packaging T: Software Normal

#545 Package pynapple: PYthon Neural Analysis Package

1

Opened 7 months ago by ankursinha. Modified 7 months ago

F: Data Analysis D: Easy good first issue T: Software S: Needs packaging Normal

#541 Package python-meshparty: A package to work with meshes, designed around use cases for analyzing neuronal morphology.

3

Opened 10 months ago by ankursinha. Modified 7 months ago

D: Easy F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#532 Package mnelab: a GUI for MNE

3

Opened a year ago by ankursinha. Modified 7 months ago

D: Hard F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#531 Package ontquery: a framework querying ontology terms

Opened a year ago by ankursinha. Modified a year ago

D: Easy F: Utilities good first issue S: Needs packaging T: Software Normal

#529 Package Neurokit: Python Toolbox for Neurophysiological Signal Processing

Opened a year ago by ankursinha. Modified a year ago

D: Normal F: Data Analysis good first issue S: Needs packaging T: Software Normal

#526 Package kaleido: Static image export for web-based visualization libraries with zero dependencies

2

Opened a year ago by ankursinha. Modified a year ago

F: Utilities S: Needs packaging T: Software D: Hard Normal

#525 Package graphia: visual analytics application developed to aid the interpretation of large and complex datasets

1

Opened a year ago by ankursinha. Modified a year ago

D: Normal F: Data Analysis S: Needs packaging T: Software Normal

#523 Package genepy3D: a python library for quantitative geometry,

1

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Utilities F: Data Analysis D: Normal good first issue Normal

#522 Package ipympl: matplotlib extension for jupyter

1

Opened a year ago by ankursinha. Modified a year ago

D: Easy good first issue S: Needs packaging T: Software F: Utilities Normal

#518 Package sreiter/ProMesh: Grid generation for scientific computations

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Utilities F: Computational neuroscience S: Needs packaging T: Software Normal

#517 Package PeyracheLab/pynapple: PYthon Neural Analysis Package

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Easy F: Data Analysis good first issue S: Needs packaging T: Software Normal

#516 Package biokit/biokit: Bioinformatics in Python

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Easy F: Data Analysis good first issue S: Needs packaging T: Software Normal

#514 Package scikit-plot: An intuitive library to add plotting functionality to scikit-learn objects

2

Opened 2 years ago by iztokf. Modified a year ago

D: Easy T: Software good first issue F: Utilities Normal

#513 Package ANNarchy/ANNarchy: ANNarchy (Artificial Neural Networks architect) is a parallel simulator for rate-coded and spiking neural networks.

2

Opened 2 years ago by ankursinha. Modified a year ago

F: Computational neuroscience good first issue S: Needs packaging T: Software D: Hard Normal

#510 Package cselab/korali: High-performance framework for uncertainty quantification, optimization and reinforcement learning.

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Utilities T: Software S: Needs packaging Normal

#508 Package optuna: A hyperparameter optimization framework

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Normal

#507 Package olivercliff/pyspi: Comparative analysis of pairwise interactions in multivariate time series.

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#506 Package barahona-research-group/hcga: Highly Comparative Graph Analysis - Code for network phenotyping

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal good first issue S: Needs packaging T: Software F: Data Analysis F: Utilities Normal

#504 Package CSDLLab/PyNeval: PyNeval, a toolbox for quantative analysis on neuron reconstruction result.

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#500 Package Donders-Institute/bidscoin: BIDScoin converts your source-level neuroimaging data to BIDS

6

Opened 2 years ago by ankursinha. Modified 11 days ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#495 Package reservoirpy/reservoirpy: A simple and flexible code for Reservoir Computing architectures like Echo State Networks

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#494 Package optimizer: Optimization of neuronal models

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Computational neuroscience good first issue S: Needs packaging T: Software Normal

#490 Package python-pooch: A friend to fetch your data files

1

Opened 2 years ago by major. Modified 7 months ago

T: Software D: Easy S: Needs packaging F: Utilities Normal

#489 Package generateDS: Generate Python data structures and XML parser from Xschema

1

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Easy F: Utilities S: Needs packaging T: Software good first issue Normal

#487 Package autoreject/autoreject: Automated rejection and repair of bad trials/sensors in M/EEG

1

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Normal

#486 Package ipympl: Matplotlib Jupyter Extension

1

Opened 2 years ago by ankursinha. Modified a year ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#485 Package lmcinnes/umap: Uniform Manifold Approximation and Projection

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#484 Package aesara-devs/aesara: Aesara is a Python library that allows one to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays.

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#483 Package fides-dev/fides: Trust Region Optimization in Python

2

Opened 2 years ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Utilities F: Data Analysis D: Easy good first issue Normal

#481 Package PEtab-dev/libpetab-python: Python package for working with PEtab files

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#480 Package AMICI-dev/AMICI: Advanced Multilanguage Interface to CVODES and IDAS

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#479 Package myst-parser - An extended commonmark compliant parser, with bridges to docutils/sphinx

1

Opened 2 years ago by major. Modified a year ago

D: Easy F: Utilities S: Needs packaging T: Software Normal

#476 Package Anipose

1

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#475 Package: Whitlock-Group/TRACER: A toolkit to register and visualize anatomical coordinates in the rat brain

1

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#473 Package spikeinterface: module for creating flexible and robust spike sorting pipelines.

6

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#471 Package dandischema

1

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Utilities F: Data Analysis D: Normal D: Easy good first issue Normal

#470 Package lukelbd/proplot: 🎨 A powerful matplotlib wrapper for making beautiful, publication-quality graphics

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

neuro-sig / NeuroFedora

Issues
267 Open 297 Closed

neuro-sig / NeuroFedora

Source Code

Issues 267 Open 297 Closed

Issues
267 Open 297 Closed