Issue #374: Container images for comp-neuro packages - NeuroFedora

neuro-sig / NeuroFedora

#374 Container images for comp-neuro packages

Closed: Fixed Feb 2, 2021 by ankursinha. Opened Jun 16, 2020 by ankursinha.

Now that we have lots of comp-neuro packages, it'll perhaps be good to build container images so that they can be used from the fedora registry at registry.fedoraproject.org.

Container guidelines here: https://docs.fedoraproject.org/en-US/containers/

Help wanted, especially from folks interested in containers + comp-neuro

nasirhm commented Jul 3, 2020

I would like to help here.

bt0dotninja commented Nov 30, 2020

Hello everyone,

We need open a repository for this project, and then submit changes, we can templating the Dockerfile for different tags (F33,F32,F31,Rawhide) with jinja2 or something like that.

I try to follow this guides [1][2] about reproducibility. The Dockerfile shows the current versions of the packages but I don't like this solution.

Build with Docker

docker build -t neurofedora .
docker run -it -p 8888:8888/tcp localhost/neurofedora

podman

sudo podman build --tag fedora:neurofedora -f ./Dockerfile sudo podman run -it -p8888:8888/tcp --name neurofedora localhost/fedora:neurofedora

Inside the container to enable jupyter notebook
jupyter notebook --allow-root --no-browser --ip=0.0.0.0

[1] https://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1008316
[2] https://docs.fedoraproject.org/en-US/containers/guidelines/contents/