neuro-sig / NeuroFedora

#283 scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit
Closed: Invalid by ankursinha. Opened by ankursinha.

Closed: Invalid
Reopen Issue

New software: neuronunit

Short description: A package for data-driven validation of neuron and ion channel models using SciUnit

Upstream URL: https://github.com/scidash/neuronunit

License: MIT

Domain: Computational modelling

Additional information

Uses sciunit, so may depend on it. Needs checking.

Metadata Update from @ankursinha:
- Issue marked as depending on: #282

Metadata Update from @ankursinha:
- Issue assigned to ankursinha

Meh, depends on lots of things that we still need to package:

https://github.com/scidash/neuronunit/blob/dev/requirements.txt

scipy>=0.17
matplotlib>=2.0
neo==0.5.2
elephant==0.4.1
igor==0.3
allensdk==0.14.5
pyNeuroML @ git+https://github.com/rgerkin/pyneuroml@master#egg=pyneuroml-9999
pyNN>=0.9
execnet
sciunit @ git+https://github.com/scidash/sciunit@dev#egg=sciunit-9999
requests
validators
lmfit
numba
dask[complete]
deap
bluepyopt @ git+https://github.com/russelljjarvis/BluePyOpt@scidash#egg=bluepyopt-9999
pylmeasure

Metadata Update from @ankursinha:
- Issue marked as depending on: #26
- Issue marked as depending on: #31

Metadata Update from @ankursinha:
- Issue marked as depending on: #362

Last commit was 4 years ago, so I'm going to skip this one.

Metadata Update from @ankursinha:
- Issue close_status updated to: Invalid
- Issue status updated to: Closed (was: Open)

This ticket has been migrated to the forgejo instance. Please find the new ticket here
https://forge.fedoraproject.org/neuro/NeuroFedora//issues/283
Metadata

D: Normal F: Computational neuroscience S: Needs packaging T: Software

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