Issues - neuro-sig/NeuroFedora - Pagure.io

neuro-sig / NeuroFedora

Issues
195 Open 107 Closed

#303 Package graph-tool: Efficent network analysis with python

2

Opened 8 days ago by ankursinha. Modified 6 days ago

D: Normal F: Data Analysis S: Needs packaging T: Software Normal

#302 Package MMCLAB - A GPU mesh-based Monte Carlo photon simulator for MATLAB/Octave

1

Opened 9 days ago by fangq. Modified 9 days ago

D: Easy F: Data Analysis F: Neuroimaging F: Utilities F: Computational neuroscience S: Needs review T: Software Normal

#301 NeuroFedora brochure

3

Opened 14 days ago by dan1mal. Modified 2 days ago

S: WIP T: Community D: Normal S: Next meeting Normal

#300 Package ZMat - a toolbox to enable zlib/gzip/lzma/lz4 compression in Octave

3

Opened 15 days ago by fangq. Modified 5 days ago

D: Easy F: Data Analysis F: Utilities T: Software S: In testing Normal

#299 Package MCXLAB - a fast 3D Monte Carlo photon transport simulator

6

Opened 15 days ago by fangq. Modified 12 days ago

D: Easy F: Computational neuroscience F: Data Analysis F: Neuroimaging T: Software T: Documentation S: In testing S: Needs documentation Normal

#298 Package JNIfTI toolbox for Octave

1

Opened 15 days ago by fangq. Modified 9 days ago

D: Easy F: Computational neuroscience F: Neuroimaging T: Software F: Data Analysis S: In testing Normal

#297 Package netypyne-UI

1

Opened 16 days ago by ankursinha. Modified 16 days ago

F: Computational neuroscience S: Needs packaging T: Software D: Hard Normal

#296 Package pynetdicom

6

Opened 19 days ago by alciregi. Modified 18 days ago

S: In review S: WIP F: Neuroimaging T: Software D: Normal Normal

#295 Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis S: Needs packaging T: Software Normal

#291 Package G-Node/python-odml: odML libraries

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#290 Package Snakemake: The Snakemake workflow management system

Opened a month ago by ankursinha. Modified a month ago

D: Easy F: Utilities S: Needs packaging T: Software High

#289 Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#288 Package KNOSSOS — 3D Image Annotation

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#287 Package rochefort-lab/fissa: A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

Opened a month ago by ankursinha. Modified a month ago

D: Easy F: Utilities S: Needs packaging T: Software Normal

#286 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Computational neuroscience S: Needs packaging T: Software Normal

#285 Do we have the required imagej plugins for neuron tracing?

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Neuroimaging T: Software Normal

#283 scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#282 Package sciunit: A test-driven framework for formally validating scientific models against data.

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#279 Package medInria: a multi-platform medical image processing and visualization software

Opened 2 months ago by mhough. Modified 2 months ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#278 Package PyRates: a tool for building rate-based neural models

Opened 2 months ago by mhough. Modified 2 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#277 Package pymanopt: a Python toolbox for optimization on manifolds

Opened 2 months ago by mhough. Modified 2 months ago

D: Easy F: Data Analysis S: Needs packaging T: Software Normal

#275 Package PyGPC: a toolbox using generalized polynomial chaos

1

Opened 2 months ago by mhough. Modified 2 months ago

D: Normal F: Data Analysis S: Needs packaging T: Software Normal

#273 Please welcome @kausdev to the team!

2

Opened 2 months ago by ankursinha. Modified 2 months ago

D: Easy T: Community Normal

#272 Package HBP's Neurorobotics Platform

3

Opened 2 months ago by mhough. Modified 2 months ago

D: Hard F: Computational neuroscience S: Needs packaging T: Software Normal

#271 Package brainiak: Brain Imaging Analysis Kit

Opened 2 months ago by ankursinha. Modified 2 months ago

D: Normal F: Neuroimaging T: Software S: Needs packaging Normal

#264 Package neurox: A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron models

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#263 Package python-ica-aroma: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#262 Package c3d: a command-line tool for converting 3D images between common file formats.

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#261 Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.

3

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#260 Package fmriprep: A Robust Preprocessing Pipeline for fMRI Data

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Hard F: Neuroimaging S: Needs packaging T: Software Low

#256 Package MEDYAN: Mechanochemical Dynamics of Active Networks

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#255 Package python-neuroCombat: Harmonizing neuroimaging data across scanners and sites

6

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Easy F: Data Analysis S: Needs packaging T: Software Normal

#254 Package spyketorch: High-speed simulator of convolutional spiking neural networks with at most one spike per neuron.

1

Opened 3 months ago by ankursinha. Modified 2 months ago

F: Computational neuroscience S: Needs packaging T: Software D: Hard Normal

#253 python-silx Software library for X-ray data analysis

2

Opened 3 months ago by lbazan. Modified 3 months ago

F: Utilities S: WIP D: Normal T: Software Normal

#252 python-glymur needed by python-fabio

1

Opened 3 months ago by lbazan. Modified 3 months ago

F: Utilities S: WIP D: Easy S: In review T: Software Normal

#251 python-fabio needed by python-silx

Opened 3 months ago by lbazan. Modified 3 months ago

D: Easy S: WIP F: Utilities T: Software Normal

#250 Figure out badges rule to award badge automatically to pagure group members

4

Opened 3 months ago by ankursinha. Modified 23 days ago

D: Normal T: Community S: Next meeting S: On hold Normal

#249 Next blog post: end of week 30

3

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Easy T: Blog Normal

#248 Package python-spikeextractors

1

Opened 4 months ago by ankursinha. Modified 3 months ago

D: Easy F: Data Analysis S: Needs packaging T: Software Normal

#247 Provide jabref jar in COPR

2

Opened 4 months ago by ankursinha. Modified a month ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#244 Package k2pdfopt

1

Opened 4 months ago by ankursinha. Modified 4 months ago

F: Utilities T: Software D: Normal S: Needs packaging Normal

#239 Should we unretire (adopt) freemind?

Opened 5 months ago by ankursinha. Modified 5 months ago

D: Normal F: Utilities T: Software Low

#238 Add more resources

2

Opened 6 months ago by ankursinha. Modified 2 months ago

D: Easy good first issue T: Documentation Normal

#237 Package vaa3D

Opened 6 months ago by ankursinha. Modified 6 months ago

D: Normal F: Neuroimaging S: Needs review T: Software Normal

#236 Package psics

Opened 6 months ago by ankursinha. Modified 6 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#235 Package Genesis3/Neurospaces

3

Opened 6 months ago by ankursinha. Modified 4 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#233 Package SpiNNaker tools

3

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#230 Package edlut

1

Opened 8 months ago by ankursinha. Modified 8 months ago

F: Computational neuroscience S: Needs packaging T: Software D: Normal Low

#229 Package biojava/biojava: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

1

Opened 8 months ago by ankursinha. Modified 8 months ago

D: Normal F: Data Analysis S: Needs packaging T: Software Normal

#221 Package easyloggingpp

Opened 9 months ago by ankursinha. Modified 9 months ago

D: Easy F: Utilities S: WIP T: Software Normal

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