Issues - neuro-sig/NeuroFedora

#332 Abstract submission to CNS*2020

Opened 14 days ago by ankursinha. Modified 14 days ago

T: Community S: WIP F: Computational neuroscience D: Normal Normal

#331 Featured applications for Comp Neuro lab

Opened 2 months ago by major. Modified 2 months ago

F: Computational neuroscience D: Easy S: Next meeting Normal

#330 Cover Image for the lab webpage.

Opened 2 months ago by major. Modified 2 months ago

F: Computational neuroscience D: Easy S: Next meeting Normal

#329 Screenshots of the new comp neuro lab image.

Opened 2 months ago by major. Modified 2 months ago

F: Computational neuroscience D: Easy S: Next meeting Normal

#328 Summary for comp neuro lab webpage.

Opened 2 months ago by major. Modified 2 months ago

F: Computational neuroscience D: Easy S: Next meeting Normal

#327 Content for Comp Neuro Lab on labs.fp.o

Opened 2 months ago by major. Modified 2 months ago

F: Computational neuroscience D: Normal S: Next meeting Normal

#324 Package pytest-env: pytest plugin used to set environment variables

1

Opened 2 months ago by major. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Easy Normal

#320 Package neuroConstruct: Software for developing biologically realistic 3D neural networks

1

Opened 2 months ago by ankursinha. Modified 22 days ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#319 Package Ermentrout/xppaut: General differential equation solver and bifurcation package

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Utilities D: Normal Normal

#318 NeuroFedora reading/listening list

4

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Community D: Easy S: Next meeting Normal

#317 Package LEMS/jLEMS

2

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: In review F: Computational neuroscience D: Normal Normal

#316 Package NeuroML/NeuroML2

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#315 Package NeuroML/jNeuroML

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#314 Package dcmstack: DICOM to Nifti conversion with meta data preservation

Opened 2 months ago by alciregi. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Easy Low

#310 Package pre-commit: A framework for managing and maintaining multi-language pre-commit hooks.

1

Opened 3 months ago by major. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Easy Normal

#307 NeuroFedora at FOSDEM 2020.

4

Opened 3 months ago by major. Modified 2 months ago

T: Community D: Normal S: Next meeting Normal

#305 Package napari/napari: napari: a fast, interactive, multi-dimensional image viewer for python

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#304 Package pynrrd

Opened 3 months ago by alciregi. Modified 3 months ago

S: Needs packaging F: Utilities D: Easy Normal

#302 Package MMCLAB - A GPU mesh-based Monte Carlo photon simulator for MATLAB/Octave

2

Opened 3 months ago by fangq. Modified 2 months ago

T: Software S: In review F: Computational neuroscience F: Neuroimaging F: Data Analysis F: Utilities D: Easy Normal

#301 NeuroFedora brochure

6

Opened 3 months ago by dan1mal. Modified 2 months ago

T: Community S: WIP S: Waiting on upstream D: Normal S: Future meeting Normal

#297 Package netypyne-UI

1

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#295 Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#291 Package G-Node/python-odml: odML libraries

2

Opened 4 months ago by ankursinha. Modified 17 hours ago

T: Software S: In review F: Utilities D: Normal Normal

#290 Package Snakemake: The Snakemake workflow management system

Opened 4 months ago by ankursinha. Modified 22 days ago

T: Software S: Needs packaging F: Utilities D: Easy High

#289 Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#288 Package KNOSSOS — 3D Image Annotation

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

#287 Package rochefort-lab/fissa: A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Utilities D: Easy Normal

#286 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Data Analysis D: Normal Normal

#285 Do we have the required imagej plugins for neuron tracing?

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software F: Neuroimaging D: Normal Normal

#283 scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit

Opened 4 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#282 Package sciunit: A test-driven framework for formally validating scientific models against data.

Opened 4 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#279 Package medInria: a multi-platform medical image processing and visualization software

4

Opened 4 months ago by mhough. Modified 2 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#278 Package PyRates: a tool for building rate-based neural models

Opened 4 months ago by mhough. Modified 4 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#277 Package pymanopt: a Python toolbox for optimization on manifolds

Opened 4 months ago by mhough. Modified 4 months ago

T: Software S: Needs packaging F: Data Analysis D: Easy Normal

#275 Package PyGPC: a toolbox using generalized polynomial chaos

1

Opened 5 months ago by mhough. Modified 5 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#272 Package HBP's Neurorobotics Platform

3

Opened 5 months ago by mhough. Modified 5 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#271 Package brainiak: Brain Imaging Analysis Kit

Opened 5 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#264 Package neurox: A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron models

Opened 6 months ago by ankursinha. Modified 6 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#263 Package python-ica-aroma: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

Opened 6 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#262 Package c3d: a command-line tool for converting 3D images between common file formats.

Opened 6 months ago by ankursinha. Modified 6 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#261 Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.

3

Opened 6 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#260 Package fmriprep: A Robust Preprocessing Pipeline for fMRI Data

Opened 6 months ago by ankursinha. Modified 6 months ago

T: Software S: Needs packaging F: Neuroimaging D: Hard Low

#256 Package MEDYAN: Mechanochemical Dynamics of Active Networks

Opened 6 months ago by ankursinha. Modified 6 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#255 Package python-neuroCombat: Harmonizing neuroimaging data across scanners and sites

6

Opened 6 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Data Analysis D: Easy Normal

#254 Package spyketorch: High-speed simulator of convolutional spiking neural networks with at most one spike per neuron.

1

Opened 6 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#253 python-silx Software library for X-ray data analysis

2

Opened 6 months ago by lbazan. Modified 6 months ago

T: Software S: WIP F: Utilities D: Normal Normal

#252 python-glymur needed by python-fabio

2

Opened 6 months ago by lbazan. Modified a month ago

T: Software S: Needs packaging F: Utilities D: Easy Normal

#251 python-fabio needed by python-silx

Opened 6 months ago by lbazan. Modified 6 months ago

T: Software S: WIP F: Utilities D: Easy Normal

#250 Figure out badges rule to award badge automatically to pagure group members

5

Opened 6 months ago by ankursinha. Modified 2 months ago

T: Community S: On hold D: Normal S: Future meeting Normal

#248 Package python-spikeextractors

1

Opened 7 months ago by ankursinha. Modified 6 months ago

T: Software S: Needs packaging F: Data Analysis D: Easy Normal

neuro-sig / NeuroFedora

Issues
200 Open 131 Closed

neuro-sig / NeuroFedora

Source Code

Issues 200 Open 131 Closed

Issues
200 Open 131 Closed