Issues - neuro-sig/NeuroFedora - Pagure.io

neuro-sig / NeuroFedora

Issues
202 Open 169 Closed

#372 Package llvmlite: A lightweight LLVM python binding for writing JIT compilers

Opened 2 days ago by ankursinha. Modified 2 days ago

T: Software S: Needs packaging F: Utilities S: Waiting on upstream D: Normal Normal

#371 Package numba

Opened 2 days ago by ankursinha. Modified 2 days ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#370 Package nwb-explorer

Opened 2 days ago by ankursinha. Modified 2 days ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#369 Create neuro-imaging packaging group

Opened 3 days ago by ankursinha. Modified 3 days ago

T: Software T: Community F: Neuroimaging D: Easy Normal

#367 Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView

Opened 8 days ago by ankursinha. Modified 8 days ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

#366 List citation in docs

Opened 12 days ago by ankursinha. Modified 12 days ago

T: Documentation D: Easy good first issue Normal

#364 Unretire jaxb2-common-basics

1

Opened 13 days ago by ankursinha. Modified 3 days ago

T: Software S: On hold S: Needs review F: Computational neuroscience D: Normal Normal

#362 Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data

Opened 23 days ago by ankursinha. Modified 23 days ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#361 Package SpikeInterface/spiketoolkit: Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

1

Opened 23 days ago by ankursinha. Modified 18 days ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#360 Package mopet

Opened 24 days ago by ankursinha. Modified 24 days ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#359 Package cellfinder: Automated 3D cell detection and registration of whole-brain images

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis F: Utilities D: Normal Normal

#358 Package betterbib: Update BibTeX files with info from online resources.

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#357 Package NeuroML/org.neuroml1.model: NeuroML V1 JAVA Model API

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#356 Package NeuroML/org.neuroml.import: Import other formats into LEMS & combine with NeuroML models

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#355 Package NeuroML/org.neuroml.export: Export from NeuroML & LEMS

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#354 Package NeuroML/org.neuroml.model: NeuroML v2 Java API

Opened a month ago by ankursinha. Modified a month ago

T: Documentation S: Needs packaging F: Computational neuroscience D: Normal Normal

#353 Package NeuroML / org.neuroml.model.injectingplugin

1

Opened a month ago by ankursinha. Modified a month ago

T: Documentation S: WIP F: Computational neuroscience D: Hard Normal

#352 Package phy: interactive visualization and manual spike sorting of large-scale ephys data

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#350 Package NEAT

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Easy good first issue Normal

#349 Package ctlee/gamer: Geometry-preserving Adaptive Mesher

1

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#347 Package python-doit

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Normal Low

#346 Package bokeh: Interactive Data Visualization in the browser, from Python

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#345 Package Brainrender

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#344 Package nengo

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Low

#343 Package sumatra

4

Opened 3 months ago by ankursinha. Modified 2 months ago

T: Software S: WIP S: In review F: Utilities D: Normal good first issue Normal

#342 Package vispy

Opened 3 months ago by major. Modified 3 months ago

T: Software S: WIP F: Utilities D: Normal Normal

#341 Package python-autograd

1

Opened 3 months ago by ankursinha. Modified 2 months ago

T: Software S: WIP F: Utilities D: Easy good first issue Normal

#334 Package neurolib-dev/neurolib: Easy whole-brain modeling for computational neuroscientists

1

Opened 3 months ago by ankursinha. Modified 8 days ago

T: Software S: Needs packaging F: Computational neuroscience D: Easy Normal

#333 Package: Neurotune, a package for optimizing electical models of excitable cells.

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Utilities D: Easy Normal

#320 Package neuroConstruct: Software for developing biologically realistic 3D neural networks

3

Opened 6 months ago by ankursinha. Modified 16 days ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#319 Package Ermentrout/xppaut: General differential equation solver and bifurcation package

Opened 6 months ago by ankursinha. Modified 6 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Utilities D: Normal Normal

#318 NeuroFedora reading/listening list

15

Opened 6 months ago by ankursinha. Modified 12 days ago

T: Community D: Easy S: Next meeting Normal

#315 Package NeuroML/jNeuroML

1

Opened 6 months ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#314 Package dcmstack: DICOM to Nifti conversion with meta data preservation

Opened 6 months ago by alciregi. Modified 3 months ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Low

#305 Package napari/napari: napari: a fast, interactive, multi-dimensional image viewer for python

Opened 7 months ago by ankursinha. Modified 7 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#304 Package pynrrd

Opened 7 months ago by alciregi. Modified 3 months ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#301 NeuroFedora brochure

9

Opened 7 months ago by dan1mal. Modified 2 months ago

T: Community S: WIP S: Needs review D: Normal Normal

#297 Package netypyne-UI

1

Opened 7 months ago by ankursinha. Modified 7 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#295 Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python

Opened 8 months ago by ankursinha. Modified 8 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#290 Package Snakemake: The Snakemake workflow management system

2

Opened 8 months ago by ankursinha. Modified 2 months ago

T: Software S: WIP S: In review F: Utilities D: Easy High

#289 Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans

Opened 8 months ago by ankursinha. Modified 8 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#288 Package KNOSSOS — 3D Image Annotation

Opened 8 months ago by ankursinha. Modified 8 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

#287 Package rochefort-lab/fissa: A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

Opened 8 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#286 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened 8 months ago by ankursinha. Modified 8 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Data Analysis D: Normal Normal

#285 Do we have the required imagej plugins for neuron tracing?

Opened 8 months ago by ankursinha. Modified 8 months ago

T: Software F: Neuroimaging D: Normal Normal

#283 scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit

1

Opened 8 months ago by ankursinha. Modified 23 days ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#279 Package medInria: a multi-platform medical image processing and visualization software

5

Opened 8 months ago by mhough. Modified 3 months ago

T: Software S: WIP F: Neuroimaging D: Normal Normal

#278 Package PyRates: a tool for building rate-based neural models

Opened 8 months ago by mhough. Modified 8 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#277 Package pymanopt: a Python toolbox for optimization on manifolds

Opened 8 months ago by mhough. Modified 3 months ago

T: Software S: Needs packaging F: Data Analysis D: Easy good first issue Normal

#275 Package PyGPC: a toolbox using generalized polynomial chaos

1

Opened 9 months ago by mhough. Modified 9 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

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