Issues - neuro-sig/NeuroFedora - Pagure.io

neuro-sig / NeuroFedora

Issues
243 Open 253 Closed

#497 Package swharden/pyABF: pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

Opened 5 days ago by ankursinha. Modified 5 days ago

D: Easy F: Data Analysis S: Needs packaging T: Software Normal

#495 Package reservoirpy/reservoirpy: A simple and flexible code for Reservoir Computing architectures like Echo State Networks

Opened 7 days ago by ankursinha. Modified 7 days ago

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#494 Package optimizer: Optimization of neuronal models

Opened 7 days ago by ankursinha. Modified 7 days ago

D: Normal F: Computational neuroscience good first issue S: Needs packaging T: Software Normal

#490 Package python-pooch: A friend to fetch your data files

Opened a month ago by major. Modified a month ago

T: Software D: Easy S: Needs packaging F: Utilities Normal

#489 Package generateDS: Generate Python data structures and XML parser from Xschema

1

Opened a month ago by ankursinha. Modified a month ago

D: Easy F: Utilities S: Needs packaging T: Software good first issue Normal

#488 Package hadim/read-roi: Read ROI files .zip or .roi generated with ImageJ.

3

Opened a month ago by ankursinha. Modified a month ago

D: Easy F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software Normal

#487 Package autoreject/autoreject: Automated rejection and repair of bad trials/sensors in M/EEG

1

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Normal

#486 Package ipympl: Matplotlib Jupyter Extension

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#485 Package lmcinnes/umap: Uniform Manifold Approximation and Projection

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#484 Package aesara-devs/aesara: Aesara is a Python library that allows one to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays.

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#483 Package fides-dev/fides: Trust Region Optimization in Python

2

Opened a month ago by ankursinha. Modified a month ago

D: Easy good first issue F: Utilities F: Data Analysis S: Needs packaging T: Software Normal

#482 Package mechmotum/cyipopt: Cython interface for the interior point optimzer IPOPT

1

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Utilities F: Data Analysis S: Needs packaging T: Software Normal

#481 Package PEtab-dev/libpetab-python: Python package for working with PEtab files

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#480 Package AMICI-dev/AMICI: Advanced Multilanguage Interface to CVODES and IDAS

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#479 Package myst-parser - An extended commonmark compliant parser, with bridges to docutils/sphinx

Opened a month ago by major. Modified a month ago

D: Easy F: Utilities S: Needs packaging T: Software Normal

#477 Package coyote: A visualization tool for reaction networks

Opened 2 months ago by ankursinha. Modified 2 months ago

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging Normal

#476 Package Anipose

1

Opened 2 months ago by ankursinha. Modified 2 months ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#475 Package: Whitlock-Group/TRACER: A toolkit to register and visualize anatomical coordinates in the rat brain

1

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Neuroimaging F: Utilities F: Data Analysis D: Normal Normal

#473 Package spikeinterface: module for creating flexible and robust spike sorting pipelines.

2

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#471 Package dandischema

1

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software D: Easy good first issue Normal

#470 Package lukelbd/proplot: 🎨 A powerful matplotlib wrapper for making beautiful, publication-quality graphics

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#469 Package Klusters/Neuroscope/NDManager: Free Data Visualization and Processing Tools for Neurophysiologists

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#467 Package python-shybrid: A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

Opened 3 months ago by ankursinha. Modified 16 days ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#466 Package python-mearec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays.

3

Opened 3 months ago by ankursinha. Modified 2 months ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#463 Package VND: neuronal visualization program

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Hard S: Needs packaging F: Utilities T: Software S: RPM Fusion Normal

#462 Package BlueBrain/NeuroR: A collection of tools to repair morphologies

Opened 3 months ago by ankursinha. Modified 3 months ago

D: Normal F: Utilities S: Needs packaging T: Software Normal

#459 Package PBLab/neural_collision_detection: Collide vasculature and neurons for fun and profit

Opened 4 months ago by ankursinha. Modified 4 months ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#458 Package R-catch22: R package for calculation of 22 CAnonical Time-series CHaracteristics

Opened 4 months ago by ankursinha. Modified 4 months ago

D: Easy F: Data Analysis S: Needs packaging T: Software Normal

#457 Package rgobi

Opened 5 months ago by ankursinha. Modified 5 months ago

D: Normal F: Data Analysis T: Software S: Needs packaging Normal

#456 Package ggobi

Opened 5 months ago by ankursinha. Modified 4 months ago

F: Data Analysis S: Needs packaging T: Software D: Normal Normal

#454 Package facebookresearch/nevergrad: A Python toolbox for performing gradient-free optimization

Opened 5 months ago by ankursinha. Modified 5 months ago

D: Normal F: Computational neuroscience F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#453 Package EDEN: fully NeuroML compliant simulator

Opened 6 months ago by ankursinha. Modified 6 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#450 Package psyneulink: A block modeling system for cognitive neuroscience

3

Opened 7 months ago by ankursinha. Modified 3 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#449 Package MIIND

2

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#448 Package denisecailab/minian: miniscope analysis pipeline with interactive visualizations

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#446 Package libsonata

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#445 Package bluepysnap

Opened 7 months ago by ankursinha. Modified 7 months ago

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#443 Package dandi: Command line client for interaction with DANDI archive elements

1

Opened 8 months ago by ankursinha. Modified 3 months ago

D: Easy F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#439 Package BlueBrain/morph-tool: A toolbox for morphology editing. It aims to provide small helper programs that perform simple tasks.

Opened 8 months ago by ankursinha. Modified 8 months ago

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#437 Package FlyBrainLab/Neuroballad

1

Opened 8 months ago by ankursinha. Modified 8 months ago

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Normal

#436 Package FlyBrainLab/NeuroMynerva

Opened 8 months ago by ankursinha. Modified 8 months ago

D: Hard F: Data Analysis F: Utilities S: Needs packaging T: Software Normal

#435 Package FlyBrainLab/FBLClient: FBLClient is a Python package that implements an API for accessing and manipulating the Fruit Fly Brain Observatory (FFBO) Project, built for the FlyBrainLab initiative.

1

Opened 8 months ago by ankursinha. Modified 4 months ago

S: On hold T: Software S: Needs packaging F: Utilities F: Data Analysis D: Easy S: Requested Normal

#434 Package FlyBrainLab components

Opened 8 months ago by ankursinha. Modified 8 months ago

D: Normal F: Data Analysis F: Utilities T: Software S: Needs packaging Normal

#433 Package iqr: simulator for large scale neural systems

Opened 8 months ago by ankursinha. Modified 8 months ago

D: Normal F: Computational neuroscience T: Software S: Needs packaging S: Requested Normal

#416 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened 11 months ago by ankursinha. Modified 11 months ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#407 Package spinalcordtoolbox: software dedicated to the processing and analysis of spinal cord MRI data.

Opened a year ago by ankursinha. Modified a year ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#406 Package brainets/frites: Framework for Information Theoretical analysis of Electrophysiological data and Statistics

1

Opened a year ago by ankursinha. Modified a month ago

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Normal

#404 Package PyOIF: Computational tool for modelling of multi-cell flows in complex geometries

Opened a year ago by ankursinha. Modified a year ago

D: Hard F: Computational neuroscience S: Needs packaging T: Software Normal

#401 Package pyplane: Phase plane analysis of nonlinear systems

25

Opened a year ago by ankursinha. Modified 3 months ago

D: Easy F: Utilities good first issue S: Needs packaging T: Software Normal

#398 Package NeurodataWithoutBorders/nwb-jupyter-widgets: Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

Opened a year ago by ankursinha. Modified a year ago

F: Data Analysis F: Utilities good first issue S: Needs packaging T: Software D: Normal Normal

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