Issues - neuro-sig/NeuroFedora

#378 Package SpikeInterface/spikely: A GUI for running popular spike sorting algorithms on extracellular data of any file format.

Opened 3 days ago by ankursinha. Modified 3 days ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#376 Package brian2tools

Opened 17 days ago by ankursinha. Modified 17 days ago

T: Software S: Needs packaging F: Computational neuroscience F: Data Analysis F: Utilities D: Normal Normal

#375 Package Bioconductor - bigPint

Opened 17 days ago by ankursinha. Modified 17 days ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#373 Package GHFC/HyPyP: The Hyperscanning Python Pipeline

Opened 22 days ago by ankursinha. Modified 22 days ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal good first issue Normal

#372 Package llvmlite: A lightweight LLVM python binding for writing JIT compilers

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Utilities S: Waiting on upstream D: Normal Normal

#371 Package numba

1

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#370 Package nwb-explorer

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#367 Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

#362 Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#361 Package SpikeInterface/spiketoolkit: Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

1

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#360 Package mopet

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#359 Package cellfinder: Automated 3D cell detection and registration of whole-brain images

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis F: Utilities D: Normal Normal

#358 Package betterbib: Update BibTeX files with info from online resources.

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#357 Package NeuroML/org.neuroml1.model: NeuroML V1 JAVA Model API

Opened 3 months ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#356 Package NeuroML/org.neuroml.import: Import other formats into LEMS & combine with NeuroML models

Opened 3 months ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#355 Package NeuroML/org.neuroml.export: Export from NeuroML & LEMS

Opened 3 months ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#354 Package NeuroML/org.neuroml.model: NeuroML v2 Java API

Opened 3 months ago by ankursinha. Modified a month ago

T: Documentation S: Needs packaging F: Computational neuroscience D: Normal Normal

#352 Package phy: interactive visualization and manual spike sorting of large-scale ephys data

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#350 Package NEAT

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Easy good first issue Normal

#349 Package ctlee/gamer: Geometry-preserving Adaptive Mesher

1

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#347 Package python-doit

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Utilities D: Normal Low

#346 Package bokeh: Interactive Data Visualization in the browser, from Python

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#345 Package Brainrender

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#344 Package nengo

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Low

#341 Package python-autograd

3

Opened 5 months ago by ankursinha. Modified 13 days ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#334 Package neurolib-dev/neurolib: Easy whole-brain modeling for computational neuroscientists

1

Opened 5 months ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Computational neuroscience D: Easy Normal

#333 Package: Neurotune, a package for optimizing electical models of excitable cells.

Opened 5 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Utilities D: Easy Normal

#320 Package neuroConstruct: Software for developing biologically realistic 3D neural networks

3

Opened 8 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#319 Package Ermentrout/xppaut: General differential equation solver and bifurcation package

Opened 8 months ago by ankursinha. Modified 8 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Utilities D: Normal Normal

#315 Package NeuroML/jNeuroML

1

Opened 8 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#314 Package dcmstack: DICOM to Nifti conversion with meta data preservation

Opened 8 months ago by alciregi. Modified 17 days ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Low

#305 Package napari/napari: napari: a fast, interactive, multi-dimensional image viewer for python

Opened 9 months ago by ankursinha. Modified 9 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#304 Package pynrrd

Opened 9 months ago by alciregi. Modified 5 months ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#297 Package netypyne-UI

1

Opened 9 months ago by ankursinha. Modified 9 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#295 Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python

Opened 10 months ago by ankursinha. Modified 10 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#289 Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans

Opened 10 months ago by ankursinha. Modified 10 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#288 Package KNOSSOS — 3D Image Annotation

Opened 10 months ago by ankursinha. Modified 10 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

#287 Package rochefort-lab/fissa: A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

Opened 10 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Utilities D: Easy good first issue Normal

#286 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened 10 months ago by ankursinha. Modified 10 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Data Analysis D: Normal Normal

#283 scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit

1

Opened 10 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#278 Package PyRates: a tool for building rate-based neural models

Opened 10 months ago by mhough. Modified 10 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#277 Package pymanopt: a Python toolbox for optimization on manifolds

Opened 10 months ago by mhough. Modified 5 months ago

T: Software S: Needs packaging F: Data Analysis D: Easy good first issue Normal

#275 Package PyGPC: a toolbox using generalized polynomial chaos

1

Opened 11 months ago by mhough. Modified 11 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#272 Package HBP's Neurorobotics Platform

3

Opened 11 months ago by mhough. Modified 11 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Hard Normal

#271 Package brainiak: Brain Imaging Analysis Kit

Opened 11 months ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#264 Package neurox: A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron models

Opened 12 months ago by ankursinha. Modified 12 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#263 Package python-ica-aroma: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

Opened a year ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#262 Package c3d: a command-line tool for converting 3D images between common file formats.

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#261 Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.

3

Opened a year ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#260 Package fmriprep: A Robust Preprocessing Pipeline for fMRI Data

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging D: Hard Low

neuro-sig / NeuroFedora

Issues
206 Open 171 Closed

neuro-sig / NeuroFedora

Source Code

Issues 206 Open 171 Closed

Issues
206 Open 171 Closed