Issues - neuro-sig/NeuroFedora

#476 Package Anipose

1

Opened 14 days ago by ankursinha. Modified 8 days ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#475 Package: Whitlock-Group/TRACER: A toolkit to register and visualize anatomical coordinates in the rat brain

1

Opened 14 days ago by ankursinha. Modified 8 days ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#469 Package Klusters/Neuroscope/NDManager: Free Data Visualization and Processing Tools for Neurophysiologists

Opened a month ago by ankursinha. Modified a month ago

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Normal

#468 Package python-pybv: A lightweight I/O utility for the BrainVision data format

2

Opened a month ago by major. Modified 17 days ago

D: Easy F: Neuroimaging T: Software S: In review Normal

#448 Package denisecailab/minian: miniscope analysis pipeline with interactive visualizations

Opened 5 months ago by ankursinha. Modified 5 months ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#443 Package dandi: Command line client for interaction with DANDI archive elements

1

Opened 6 months ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Neuroimaging F: Utilities F: Data Analysis D: Easy Normal

#416 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened 9 months ago by ankursinha. Modified 9 months ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#407 Package spinalcordtoolbox: software dedicated to the processing and analysis of spinal cord MRI data.

Opened 11 months ago by ankursinha. Modified 11 months ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#386 Package gallantlab/pycortex: Pycortex is a python-based toolkit for surface visualization of fMRI data

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging F: Utilities D: Easy S: Needs documentation good first issue Normal

#373 Package GHFC/HyPyP: The Hyperscanning Python Pipeline

Opened a year ago by ankursinha. Modified a year ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software good first issue Normal

#369 Create neuro-imaging packaging group

Opened a year ago by ankursinha. Modified a year ago

D: Easy F: Neuroimaging T: Software T: Community Normal

#367 Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView

Opened a year ago by ankursinha. Modified a year ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#359 Package cellfinder: Automated 3D cell detection and registration of whole-brain images

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging F: Utilities F: Data Analysis D: Normal Normal

#288 Package KNOSSOS — 3D Image Annotation

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Normal

#285 Do we have the required imagej plugins for neuron tracing?

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging T: Software Normal

#279 Package medInria: a multi-platform medical image processing and visualization software

5

Opened 2 years ago by mhough. Modified 2 years ago

D: Normal F: Neuroimaging T: Software S: WIP Normal

#271 Package brainiak: Brain Imaging Analysis Kit

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging T: Software S: Needs packaging Normal

#263 Package python-ica-aroma: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#262 Package c3d: a command-line tool for converting 3D images between common file formats.

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#261 Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.

3

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#260 Package fmriprep: A Robust Preprocessing Pipeline for fMRI Data

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Hard F: Neuroimaging S: Needs packaging T: Software Low

#237 Package vaa3D

Opened 2 years ago by ankursinha. Modified a year ago

D: Normal F: Neuroimaging T: Software S: Needs packaging Normal

#191 Package MMVT: Multi-Modality Visualization Tool

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#167 Package mICA Toolbox

Opened 2 years ago by mhough. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#151 Package camino

Opened 2 years ago by mhough. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#150 Package FreeSurfer

Opened 2 years ago by mhough. Modified 2 years ago

D: Hard F: Neuroimaging S: Needs packaging T: Software Normal

#143 Package 3D Slicer

6

Opened 2 years ago by mhough. Modified 2 years ago

D: Hard F: Neuroimaging S: Needs packaging T: Software Normal

#142 Package Forward: Realistic EEG forward modeling

Opened 2 years ago by mhough. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#141 Package SimNIBS: Simulation of Non-invasive Brain Stimulation

Opened 2 years ago by mhough. Modified 2 years ago

F: Neuroimaging D: Normal S: Needs packaging T: Software Normal

#140 Package FABBER

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging D: Normal S: Needs packaging T: Software Normal

#139 Package FEAT

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#138 Package TractoR: Tractography with R

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging D: Normal S: Needs packaging T: Software Normal

#137 Package BASIL: Bayesian Inference for Arterial Spin Labeling MRI

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Normal F: Neuroimaging T: Software S: Needs packaging High

#136 Package eddyqc: automatically perform QC both at the single subject and study-wise level

1

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging S: Needs packaging T: Software Normal

#135 Package eddy: a tool for correcting eddy currents and movements in diffusion data

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging D: Normal S: Needs packaging T: Software Normal

#132 Package ICA-AROMA

Opened 2 years ago by mhough. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#130 Package FIX

3

Opened 2 years ago by mhough. Modified 2 years ago

D: Normal F: Neuroimaging S: Needs packaging Normal

#123 Package mne-cpp

28

Opened 2 years ago by ankursinha. Modified a month ago

S: WIP D: Easy F: Neuroimaging T: Software Normal

#105 Package voxbo: free software for brain image analysis

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging T: Software S: Needs packaging Normal

#100 Package solar-eclipse: An Imaging Genetics Analyses Software

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging S: Needs packaging T: Software Normal

#92 Package nifti2dicom: Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series

1

Opened 2 years ago by ankursinha. Modified a year ago

F: Neuroimaging S: Needs packaging T: Software S: On hold Normal

#90 Package mrtrix3: a set of tools to perform various types of diffusion MRI analyses

2

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging T: Software S: Needs packaging Normal

#89 Package mriconvert

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging T: Software S: Needs packaging Normal

#88 Package MIA: a toolkit for gray scale medical image analysis

7

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging S: Needs packaging T: Software Low

#87 Package fsl-melview

1

Opened 2 years ago by ankursinha. Modified a year ago

F: Neuroimaging S: Needs packaging T: Software Low

#83 Package itksnap: segment structures in 3D medical images

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging T: Software S: Needs packaging Normal

#82 Package ismrmrd: ISMRM Raw Data Format

2

Opened 2 years ago by ankursinha. Modified a year ago

F: Neuroimaging S: Needs packaging T: Software Normal

#80 Package: heudiconv: A flexible DICOM converter for organizing brain imaging data into structured directory layouts

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging S: Needs packaging T: Software Normal

#76 Package dicomnifti: MRI images stored in DICOM format to NIfTI format

Opened 2 years ago by ankursinha. Modified 2 years ago

D: Easy F: Neuroimaging S: Needs packaging T: Software Normal

#75 Package convert3d: ommand-line tool for converting 3D images between common file formats

Opened 2 years ago by ankursinha. Modified 2 years ago

F: Neuroimaging S: Needs packaging T: Software Normal

neuro-sig / NeuroFedora

Issues
231 Open 246 Closed

neuro-sig / NeuroFedora

Source Code

Issues 231 Open 246 Closed

Issues
231 Open 246 Closed