Issues - neuro-sig/NeuroFedora

#585 Migration to Forgejo (forge.fp.o)

2

Opened Feb 2, 2026 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP Low

#583 Create container image to run tests suite: to allow us to install `dnf` deps

2

Opened Jul 29, 2025 by ankursinha. Modified Feb 20, 2026

D: Easy T: Software Low

#580 Limiting/reducing/rethinking our Python packaging/packages

26

Opened Jun 6, 2025 by ankursinha. Modified Feb 20, 2026

S: Needs review T: Community T: Software Low

#578 Package NiMARE

1

Opened Mar 19, 2025 by gui1ty. Modified Feb 20, 2026

Low

#570 Package NeuroEditor: for the visualization and edition of morphological tracings

5

Opened Feb 15, 2024 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#567 Set monitoring status in dist-git to "Monitoring" for packages using Packit

13

Opened Jan 1, 2024 by gui1ty. Modified Feb 20, 2026

S: Next meeting Low

#566 Update python-steps to latest release (5.0.3)

10

Opened Dec 2, 2023 by gui1ty. Modified Feb 20, 2026

S: Next meeting S: WIP T: Software Low

#560 Package vispy: high-performance interactive 2D/3D data visualization library

10

Opened Sep 17, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#556 Package sciris: Fast, flexible tools to simplify scientific Python

2

Opened Aug 24, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In review T: Software good first issue Low

#555 Package AstroVascPy

5

Opened Jul 15, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#554 Package neurodamus: BBP Simulation Control application for Neuron

1

Opened Jul 15, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#553 Package Grape: GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluation

3

Opened Jun 29, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#550 Package PHATE: Visualizing Transitions and Structure for Biological Data Exploration

2

Opened Jun 8, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Low

#547 Package MouseLand/rastermap: A multi-dimensional embedding algorithm

1

Opened May 25, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#546 Package sanpy: software for whole-cell current clamp analysis

1

Opened May 18, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software good first issue Low

#545 Package pynapple: PYthon Neural Analysis Package

2

Opened May 18, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Low

#532 Package mnelab: a GUI for MNE

4

Opened Oct 14, 2022 by ankursinha. Modified Feb 20, 2026

D: Hard F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Low

#531 Package ontquery: a framework querying ontology terms

2

Opened Sep 29, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#529 Package Neurokit: Python Toolbox for Neurophysiological Signal Processing

1

Opened Sep 5, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software good first issue Low

#526 Package kaleido: Static image export for web-based visualization libraries with zero dependencies

3

Opened Aug 6, 2022 by ankursinha. Modified Feb 20, 2026

D: Hard F: Utilities S: Needs packaging T: Software Low

#525 Package graphia: visual analytics application developed to aid the interpretation of large and complex datasets

2

Opened Aug 1, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#519 Package ngltr/sinaps: a Python package providing a fast, flexible and expressive tool to model signal propagation and ionic electrodiffusion in neurons

1

Opened May 17, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs packaging good first issue Low

#518 Package sreiter/ProMesh: Grid generation for scientific computations

1

Opened Apr 26, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#516 Package biokit/biokit: Bioinformatics in Python

1

Opened Apr 7, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Low

#510 Package cselab/korali: High-performance framework for uncertainty quantification, optimization and reinforcement learning.

1

Opened Mar 2, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#509 neurophysiological-analysis/FiNN: A Python Toolbox for the analysis of electrophysiological data

1

Opened Feb 21, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging Low

#506 Package barahona-research-group/hcga: Highly Comparative Graph Analysis - Code for network phenotyping

1

Opened Feb 11, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#504 Package CSDLLab/PyNeval: PyNeval, a toolbox for quantative analysis on neuron reconstruction result.

1

Opened Feb 1, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#500 Package Donders-Institute/bidscoin: BIDScoin converts your source-level neuroimaging data to BIDS

9

Opened Jan 17, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Low

#495 Package reservoirpy/reservoirpy: A simple and flexible code for Reservoir Computing architectures like Echo State Networks

1

Opened Nov 30, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Normal

#494 Package optimizer: Optimization of neuronal models

1

Opened Nov 30, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software good first issue Low

#493 Adding Fedora badges to GitHub repos

4

Opened Nov 29, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community T: Documentation T: Outreach and dissemination good first issue Low

#490 Package python-pooch: A friend to fetch your data files

2

Opened Nov 8, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#489 Package generateDS: Generate Python data structures and XML parser from Xschema

2

Opened Nov 1, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#487 Package autoreject/autoreject: Automated rejection and repair of bad trials/sensors in M/EEG

2

Opened Oct 27, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#485 Package lmcinnes/umap: Uniform Manifold Approximation and Projection

3

Opened Oct 26, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#484 Package aesara-devs/aesara: Aesara is a Python library that allows one to define, optimize, and efficiently evaluate mathematical expressions involving multi-dimensional arrays.

1

Opened Oct 26, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#483 Package fides-dev/fides: Trust Region Optimization in Python

3

Opened Oct 26, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#81 Package incf-nidash-oneclick: one click sharing

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#80 Package: heudiconv: A flexible DICOM converter for organizing brain imaging data into structured directory layouts

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#77 Request package transfers from Igor

6

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

S: Needs-commit-rights T: Community Low

#76 Package dicomnifti: MRI images stored in DICOM format to NIfTI format

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging S: Needs packaging T: Software Low

#75 Package convert3d: ommand-line tool for converting 3D images between common file formats

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#74 Package connectomeviewer:

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#72 Package Connectome Workbench: open source, freely available visualization and discovery tool used to map neuroimaging data

5

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Neuroimaging S: Needs packaging T: Software Low

#71 Package afni: Analysis of Functional NeuroImages

5

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#70 Package ants: Advanced Normalization Tools (ANTs)

4

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#69 Package python-loo.py

1

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Utilities S: Needs packaging T: Software Low

#68 Package tvb-library

3

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging S: Waiting on upstream T: Software Low

#67 Package myriad

1

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#66 Package SpineML_2_PyNN

1

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#65 Package SpineCreator

1

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#64 Package PyDStool

6

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#62 Package 9ML-toolkit

2

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#61 Package pype9

3

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Inactive upstream S: Needs packaging T: Software Normal

#60 Package python-nestml

1

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#58 Package sigviewer

3

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#57 Package FSL

28

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Data Analysis S: Bad licence S: Needs packaging S: RPM Fusion T: Software Lowest

#53 Package NixView

2

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#52 Package nix

2

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#51 Package stimfit

3

Opened Nov 2, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#50 Package hbp_archive

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#48 Package L2L

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#47 Package tridesclous

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#46 Package nuitka

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Normal

#45 Package python-uncertainpy

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#42 Package python-expyriment

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#41 Package python-neuroshare

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#40 Package debruijn

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#37 Package python-cregg

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#36 Package python-psychopy

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Utilities S: Needs packaging S: WIP T: Software Low

#34 Package MorphoPy

8

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging S: Waiting on upstream T: Software Low

#33 Package CSA

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Needs packaging T: Software Low

#22 Package python-pymice

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#19 Package python-pymc3

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging S: Stalled T: Software Low

#18 Package python-pymvpa

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging S: Stalled T: Software Low

#17 Package suite2p

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#12 Package python-dmri-commit

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging S: Stalled T: Software Low

#11 Package itktools

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging S: Stalled T: Software Low

#379 Package Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model

1

Opened Jul 9, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs packaging T: Software good first issue Low

#378 Package SpikeInterface/spikely: A GUI for running popular spike sorting algorithms on extracellular data of any file format.

1

Opened Jul 2, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#376 Package brian2tools

4

Opened Jun 18, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#375 Package Bioconductor - bigPint

1

Opened Jun 18, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#373 Package GHFC/HyPyP: The Hyperscanning Python Pipeline

1

Opened Jun 13, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software good first issue Low

#370 Package nwb-explorer

2

Opened May 28, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#369 Create neuro-imaging packaging group

4

Opened May 28, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging T: Community T: Software Low

#367 Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView

1

Opened May 22, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Low

#360 Package mopet

1

Opened May 6, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#359 Package cellfinder: Automated 3D cell detection and registration of whole-brain images

1

Opened Apr 30, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Low

#358 Package betterbib: Update BibTeX files with info from online resources.

8

Opened Apr 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#352 Package phy: interactive visualization and manual spike sorting of large-scale ephys data

1

Opened Apr 25, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#349 Package ctlee/gamer: Geometry-preserving Adaptive Mesher

4

Opened Apr 8, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#347 Package python-doit

1

Opened Mar 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Normal

#345 Package Brainrender

1

Opened Mar 19, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#344 Package nengo

1

Opened Mar 11, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#342 Package vispy

1

Opened Feb 26, 2020 by major. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#334 Package neurolib-dev/neurolib: Easy whole-brain modeling for computational neuroscientists

2

Opened Feb 5, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs packaging T: Software Low

#319 Package Ermentrout/xppaut: General differential equation solver and bifurcation package

1

Opened Nov 12, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#318 NeuroFedora reading/listening list

87

Opened Nov 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#314 Package dcmstack: DICOM to Nifti conversion with meta data preservation

1

Opened Nov 6, 2019 by alciregi. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Normal

#305 Package napari/napari: napari: a fast, interactive, multi-dimensional image viewer for python

2

Opened Oct 25, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#304 Package pynrrd

5

Opened Oct 23, 2019 by alciregi. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#297 Package netypyne-UI

2

Opened Oct 3, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#295 Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python

1

Opened Sep 24, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#289 Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans

1

Opened Sep 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#288 Package KNOSSOS — 3D Image Annotation

1

Opened Sep 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Low

#287 Package rochefort-lab/fissa: A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

1

Opened Sep 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#286 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

2

Opened Sep 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Data Analysis S: Needs packaging T: Software Low

#285 Do we have the required imagej plugins for neuron tracing?

1

Opened Sep 9, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging T: Software Low

#279 Package medInria: a multi-platform medical image processing and visualization software

6

Opened Sep 1, 2019 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#278 Package PyRates: a tool for building rate-based neural models

1

Opened Sep 1, 2019 by mhough. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#277 Package pymanopt: a Python toolbox for optimization on manifolds

2

Opened Sep 1, 2019 by mhough. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software Low

#275 Package PyGPC: a toolbox using generalized polynomial chaos

2

Opened Aug 19, 2019 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#272 Package HBP's Neurorobotics Platform

4

Opened Aug 14, 2019 by mhough. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#271 Package brainiak: Brain Imaging Analysis Kit

1

Opened Aug 13, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#264 Package neurox: A parallel & distributed asynchronous simulator of extended Hodgkin-Huxley neuron models

1

Opened Jul 28, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#263 Package python-ica-aroma: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

1

Opened Jul 25, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#262 Package c3d: a command-line tool for converting 3D images between common file formats.

1

Opened Jul 25, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#261 Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.

4

Opened Jul 25, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#260 Package fmriprep: A Robust Preprocessing Pipeline for fMRI Data

1

Opened Jul 25, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Neuroimaging S: Needs packaging T: Software Normal

#256 Package MEDYAN: Mechanochemical Dynamics of Active Networks

1

Opened Jul 19, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#254 Package spyketorch: High-speed simulator of convolutional spiking neural networks with at most one spike per neuron.

2

Opened Jul 15, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#253 python-silx Software library for X-ray data analysis

3

Opened Jul 9, 2019 by lbazan. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#251 python-fabio needed by python-silx

1

Opened Jul 9, 2019 by lbazan. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#244 Package k2pdfopt

2

Opened Jun 14, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#239 Should we unretire (adopt) freemind?

4

Opened May 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Utilities T: Software Normal

#237 Package vaa3D

1

Opened Apr 15, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#236 Package psics

1

Opened Apr 2, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#235 Package Genesis3/Neurospaces

4

Opened Apr 2, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#233 Package SpiNNaker tools

4

Opened Mar 26, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#230 Package edlut

2

Opened Feb 27, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#229 Package biojava/biojava: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

2

Opened Feb 19, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#220 Package neuronC: Neural Simulation Language

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Inactive upstream T: Software Low

#218 Package mien: Model Interaction Environment for Neuroscience

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Inactive upstream T: Software Normal

#217 Package insilico: Neuronal Network Simulation Library

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Inactive upstream T: Software Normal

#216 Package gepetto: web based platform to build neuroscience applications

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#215 Package bmtk: Brain Modeling Toolkit

5

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#214 Package bdtoolbox: brain dynamics toolbox

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#213 Package vcell: Virtual Cell

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#209 Package meredys: MEsoscopic REaction DYnamics Simulator

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Inactive upstream Normal

#208 Package cellblender: Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#207 Package mcell: MCell Monte Carlo Simulator of Cellular Microphysiology

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#205 Package ecell

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#200 Package protSim: Abstracted Protein Simulator

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#191 Package MMVT: Multi-Modality Visualization Tool

1

Opened Jan 7, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#178 Package Stytra: A modular package to control stimulation and track behaviour

1

Opened Dec 12, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Normal

#177 Package moabb

1

Opened Dec 12, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#176 Package meshfix

6

Opened Dec 11, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Utilities S: In testing S: Needs packaging T: Software Low

#174 Package python-pactools

5

Opened Dec 8, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#172 Package esig

1

Opened Dec 8, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#170 NITRC Top Downloads Webpage

1

Opened Dec 7, 2018 by mhough. Modified Feb 20, 2026

D: Easy T: Community Low

#169 Package Dynare

1

Opened Dec 7, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#168 Package PyPNS: A Python Peripheral Nerve Simulator

1

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#167 Package mICA Toolbox

1

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#166 Package duneuro

1

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#165 Package DUNE Numerics

1

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#164 Package GPy

1

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#163 Package ConnectopicMapping

1

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#160 Package scikit-fmm

1

Opened Dec 3, 2018 by lbazan. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#158 Package FiPy

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#151 Package camino

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#150 Package FreeSurfer

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Hard F: Neuroimaging S: Needs packaging T: Software Low

#149 Package Fijee

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#148 Package SCIRun

9

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Hard F: Data Analysis S: Needs packaging S: On hold T: Software Normal

#147 Package MCX: Monte Carlo eXtreme

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#145 Package HNN: Human Neocortical Neurosolver

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#144 Package brainageR

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#143 Package 3D Slicer

7

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Hard F: Neuroimaging S: Needs packaging T: Software Low

#142 Package Forward: Realistic EEG forward modeling

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#141 Package SimNIBS: Simulation of Non-invasive Brain Stimulation

1

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#140 Package FABBER

1

Opened Nov 28, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#139 Package FEAT

1

Opened Nov 28, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#138 Package TractoR: Tractography with R

1

Opened Nov 28, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#137 Package BASIL: Bayesian Inference for Arterial Spin Labeling MRI

1

Opened Nov 28, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Lowest

#136 Package eddyqc: automatically perform QC both at the single subject and study-wise level

2

Opened Nov 27, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#135 Package eddy: a tool for correcting eddy currents and movements in diffusion data

1

Opened Nov 27, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#132 Package ICA-AROMA

1

Opened Nov 24, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#131 Package FSL-FEEDS

1

Opened Nov 24, 2018 by mhough. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#130 Package FIX

4

Opened Nov 24, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging Low

#129 Package PALM

2

Opened Nov 24, 2018 by mhough. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#123 Package mne-cpp

38

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging S: WIP T: Software Low

#113 Package D3D: Java-based 3D reaction-diffusion simulator

2

Opened Nov 19, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Needs packaging T: Software Low

#105 Package voxbo: free software for brain image analysis

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#104 Package vowpal_wabbit

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Normal

#103 Package spyke_viewer: a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#102 Package spykeutils: Utilities for analyzing electrophysiological data

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#100 Package solar-eclipse: An Imaging Genetics Analyses Software

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#98 Package PsychToolbox: free set of Matlab and GNU Octave functions for vision and neuroscience research

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#97 Package psignifit:

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#96 Package openwalnut: an open source tool for multi-modal data visualization

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#95 Package openvibe: software platform dedicated to designing, testing and using brain-computer interfaces.

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#94 Package openelectrophy

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#93 Package odin

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#92 Package nifti2dicom: Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series

2

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging S: On hold T: Software Low

#91 Package mridefacer: Helper to aid de-identification of MRI images (3D or 4D)

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#90 Package mrtrix3: a set of tools to perform various types of diffusion MRI analyses

3

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#89 Package mriconvert

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#88 Package MIA: a toolkit for gray scale medical image analysis

8

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Normal

#87 Package fsl-melview

2

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Normal

#85 Package libGDF: C++ implementation of GDF

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging T: Software Low

#84 Package klustakwik: automatic clustering of continuous data into a mixture of Gaussians

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#83 Package itksnap: segment structures in 3D medical images

1

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#82 Package ismrmrd: ISMRM Raw Data Format

4

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging S: WIP T: Software Low

#481 Package PEtab-dev/libpetab-python: Python package for working with PEtab files

1

Opened Oct 26, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#480 Package AMICI-dev/AMICI: Advanced Multilanguage Interface to CVODES and IDAS

1

Opened Oct 26, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#479 Package myst-parser - An extended commonmark compliant parser, with bridges to docutils/sphinx

2

Opened Oct 24, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#477 Package coyote: A visualization tool for reaction networks

1

Opened Oct 11, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging Low

#476 Package Anipose

2

Opened Oct 4, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Low

#475 Package: Whitlock-Group/TRACER: A toolkit to register and visualize anatomical coordinates in the rat brain

2

Opened Oct 4, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Low

#473 Package spikeinterface: module for creating flexible and robust spike sorting pipelines.

7

Opened Sep 20, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#470 Package lukelbd/proplot: 🎨 A powerful matplotlib wrapper for making beautiful, publication-quality graphics

4

Opened Sep 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#469 Package Klusters/Neuroscope/NDManager: Free Data Visualization and Processing Tools for Neurophysiologists

1

Opened Sep 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Low

#466 Package python-mearec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays.

4

Opened Sep 13, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#463 Package VND: neuronal visualization program

1

Opened Sep 9, 2021 by ankursinha. Modified Feb 20, 2026

D: Hard F: Utilities S: Needs packaging S: RPM Fusion T: Software Low

#462 Package BlueBrain/NeuroR: A collection of tools to repair morphologies

1

Opened Sep 2, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#461 Tracker ticket: upstream contributions

12

Opened Aug 23, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy S: Future meeting T: Community Low

#459 Package PBLab/neural_collision_detection: Collide vasculature and neurons for fun and profit

1

Opened Aug 10, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#458 Package R-catch22: R package for calculation of 22 CAnonical Time-series CHaracteristics

1

Opened Aug 9, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software Low

#457 Package rgobi

1

Opened Jul 29, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#456 Package ggobi

2

Opened Jul 29, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#454 Package facebookresearch/nevergrad: A Python toolbox for performing gradient-free optimization

1

Opened Jul 5, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#453 Package EDEN: fully NeuroML compliant simulator

3

Opened Jun 23, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#450 Package psyneulink: A block modeling system for cognitive neuroscience

4

Opened May 25, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#449 Package MIIND

3

Opened May 24, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#448 Package denisecailab/minian: miniscope analysis pipeline with interactive visualizations

1

Opened May 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Low

#437 Package FlyBrainLab/Neuroballad

2

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#436 Package FlyBrainLab/NeuroMynerva

1

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Hard F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#435 Package FlyBrainLab/FBLClient: FBLClient is a Python package that implements an API for accessing and manipulating the Fruit Fly Brain Observatory (FFBO) Project, built for the FlyBrainLab initiative.

2

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging S: On hold S: Requested T: Software Low

#434 Package FlyBrainLab components

1

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#433 Package iqr: simulator for large scale neural systems

2

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging S: Requested T: Software Low

#426 Package genn-team/genn: GeNN is a GPU-enhanced Neuronal Network simulation environment based on code generation for Nvidia CUDA.

1

Opened Feb 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#416 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

1

Opened Jan 11, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging S: Needs packaging T: Software Low

#407 Package spinalcordtoolbox: software dedicated to the processing and analysis of spinal cord MRI data.

1

Opened Nov 9, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Low

#406 Package brainets/frites: Framework for Information Theoretical analysis of Electrophysiological data and Statistics

5

Opened Nov 2, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Low

#404 Package PyOIF: Computational tool for modelling of multi-cell flows in complex geometries

1

Opened Oct 20, 2020 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#398 Package NeurodataWithoutBorders/nwb-jupyter-widgets: Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.

1

Opened Oct 7, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#397 Package holoviews: Stop plotting your data - annotate your data and let it visualize itself.

1

Opened Oct 7, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#396 Package pypesto: Parameter EStimation TOolbox for python

5

Opened Oct 6, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Utilities S: Needs packaging T: Software good first issue Low

#394 Package alejoe91/MEArec: Fast and customizable of extracellular recordings on MEA

2

Opened Sep 15, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#391 Check translations for NeuroFedora web pages

3

Opened Sep 3, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community T: Documentation Low

#386 Package gallantlab/pycortex: Pycortex is a python-based toolkit for surface visualization of fMRI data

1

Opened Aug 18, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging F: Utilities S: Needs documentation S: Needs packaging T: Software good first issue Low

#383 Package JASP: Graphical Statistical Software for Common Statistical Designs

1

Opened Jul 29, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs documentation S: Needs packaging T: Software good first issue Low

#579 Dropping the comp-neuro spin

8

Opened May 6, 2025 by ankursinha. Modified Feb 20, 2026

D: Easy S: Needs review S: Next meeting T: Community T: Outreach and dissemination Low

#577 Port comp-neuro iso kickstart to Kiwi

3

Opened Feb 10, 2025 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: WIP T: Community T: Software Low

#576 nixio ships lenna.png - which is not open source

3

Opened Dec 6, 2024 by gui1ty. Modified Feb 20, 2026

Low

#575 Package python-hiveplotlib: Visualize Network Data with Hive Plots

2

Opened Sep 25, 2024 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#574 Package NeuroPyxels

2

Opened Jun 20, 2024 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#573 Planet neuroscience: hasn't updated in 7 months!

3

Opened Apr 22, 2024 by ankursinha. Modified Feb 20, 2026

D: Normal S: Next meeting T: Community T: Outreach and dissemination Low

#572 Planet neuroscientists is down

3

Opened Apr 22, 2024 by ankursinha. Modified Feb 20, 2026

D: Normal S: Next meeting T: Community T: Outreach and dissemination Low

#571 Package superset: A modern, enterprise-ready business intelligence web application

3

Opened Mar 6, 2024 by iztokf. Modified Feb 20, 2026

Low

#569 Package Snakemake 8 plugins

4

Opened Jan 19, 2024 by music. Modified Feb 20, 2026

D: Easy Low

#568 How to remove neuro-sig from orphaned python-maya package?

5

Opened Jan 15, 2024 by ankursinha. Modified Feb 20, 2026

S: Needs review S: Next meeting T: Community T: Software Low

#565 Update spyder to 5.5.0 in F39

6

Opened Nov 11, 2023 by gui1ty. Modified Feb 20, 2026

D: Normal S: WIP T: Software Low

#564 Consider moving our bi-weekly meeting to a meeting room

5

Opened Nov 5, 2023 by gui1ty. Modified Feb 20, 2026

S: Next meeting T: Community Low

#563 State of python packages that use nodejs/npm (bokeh/plotly)

9

Opened Oct 30, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal S: Next meeting S: WIP T: Software Low

#562 Package lqrt: obust Hypothesis Testing of Location Parameters using Lq-Likelihood-Ratio-Type Test

3

Opened Oct 18, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging S: Needs review Low

#561 Package dabest: Data Analysis and Visualization using Bootstrap-Coupled Estimation

2

Opened Oct 18, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software good first issue Low

#559 Package pydapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS

3

Opened Sep 14, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#558 Package pyomexmeta: Python bindings for libOmexMeta, a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

4

Opened Sep 12, 2023 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#557 Package SWC_BATCH_CHECK: Provides methods for batch validating data in SWC neuron morphology files

2

Opened Sep 11, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#552 Using packit for some package updates (simpler python packages?)

3

Opened Jun 19, 2023 by ankursinha. Modified Feb 20, 2026

D: Normal S: Needs review S: Next meeting T: Software Low

#551 EPEL support

7

Opened Jun 8, 2023 by ankursinha. Modified Feb 20, 2026

S: Next meeting T: Community T: Software Low PR#25

#549 NeuroFedora presence at Flock 2023 (Cork, Ireland)

25

Opened Jun 6, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting S: WIP T: Community T: Outreach and dissemination Low

#548 Review vxl package with regards to license and stripping lenna image

13

Opened Jun 6, 2023 by gui1ty. Modified Feb 20, 2026

S: Needs documentation S: Needs review S: Next meeting T: Documentation Low

#544 Use mesonpy for building python-scikit-misc

13

Opened Apr 30, 2023 by gui1ty. Modified Feb 20, 2026

D: Normal S: WIP T: Software Low

#543 Unbundle TIFF library from IV

5

Opened Mar 26, 2023 by gui1ty. Modified Feb 20, 2026

S: Next meeting S: WIP T: Software Low

#542 Package python-intern: SDK for interacting with neuroscience data via the Boss API.

3

Opened Mar 2, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#541 Package python-meshparty: A package to work with meshes, designed around use cases for analyzing neuronal morphology.

5

Opened Feb 28, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#540 Package python-papermill

3

Opened Feb 27, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs review T: Software good first issue Low

#539 Simulation tools comps group: change to "default"?

6

Opened Feb 1, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Software Low

#538 NeuroFedora mastodon account?

7

Opened Jan 30, 2023 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community T: Outreach and dissemination Low

#537 Package Opytimizer: A Python library consisting of meta-heuristic optimization algorithms

11

Opened Nov 18, 2022 by iztokf. Modified Feb 20, 2026

D: Normal F: Utilities S: In review T: Software Low

#536 Package dunamai: Dynamic version generation

2

Opened Oct 31, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs review T: Software Low

#535 Package poetry-dynamic-versioning: Plugin for Poetry to enable dynamic versioning based on VCS tags

2

Opened Oct 31, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs review T: Software Low

#534 Package pytorch/pytorch: An open source machine learning framework

7

Opened Oct 29, 2022 by gui1ty. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#533 Have all neuro-sig packages added to Zuul?

11

Opened Oct 20, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#530 Update/rebuild copr packages

3

Opened Sep 12, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#528 Package python-plotnine: A grammar of graphics for python

22

Opened Aug 23, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#527 Package RatInABox: A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

5

Opened Aug 18, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Utilities S: Needs packaging T: Software good first issue Low

#524 Package blenderNEURON: Exports 3D structure and activity from NEURON simulator to Blender

2

Opened Jul 27, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Utilities S: Needs packaging good first issue Low

#523 Package genepy3D: a python library for quantitative geometry,

3

Opened Jul 7, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#522 Package ipympl: matplotlib extension for jupyter

3

Opened Jul 5, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#521 Package python-grip: Render local readme files before sending off to GitHub.

4

Opened Jul 1, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging good first issue Low

#520 Welcome to the team @aekoroglu!

2

Opened May 18, 2022 by ankursinha. Modified Feb 20, 2026

T: Community Low

#517 Package PeyracheLab/pynapple: PYthon Neural Analysis Package

2

Opened Apr 13, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Low

#515 Package: saulpw/visidata: A terminal spreadsheet multitool for discovering and arranging data

2

Opened Apr 1, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#514 Package scikit-plot: An intuitive library to add plotting functionality to scikit-learn objects

5

Opened Mar 21, 2022 by iztokf. Modified Feb 20, 2026

D: Easy F: Utilities S: Inactive upstream T: Software good first issue Low

#513 Package ANNarchy/ANNarchy: ANNarchy (Artificial Neural Networks architect) is a parallel simulator for rate-coded and spiking neural networks.

5

Opened Mar 8, 2022 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software good first issue Low

#512 Package ephyviewer: Simple viewers for ephys signals, events, video and more

3

Opened Mar 7, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software good first issue Low

#511 Package sonpy: The Python interface to the 64-bit Son library

4

Opened Mar 4, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Bad licence S: Needs packaging T: Software Low

#508 Package optuna: A hyperparameter optimization framework

2

Opened Feb 18, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience F: Utilities S: Needs packaging T: Software Low

#507 Package olivercliff/pyspi: Comparative analysis of pairwise interactions in multivariate time series.

2

Opened Feb 11, 2022 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software good first issue Low

#505 Setup blog on GitHub pages, and add to the Fedora and Neuroscientists planets

4

Opened Feb 11, 2022 by ankursinha. Modified Feb 20, 2026

T: Community Low

#503 Package python-pep440

4

Opened Jan 24, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#502 Package python-setup-meta: Simplify your setup.py

4

Opened Jan 24, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs review T: Software good first issue Low

#501 Package python-interface-meta

1

Opened Jan 24, 2022 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#499 Package python-pooch: A friend to fetch your data files

3

Opened Dec 31, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs documentation T: Documentation T: Software Low

#498 Package python-formulaic: An implementation of Wilkinson formulas.

5

Opened Dec 30, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: In review T: Software Low

#497 Package swharden/pyABF: pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

3

Opened Dec 2, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software Low

#496 Tracker ticket for @vanessakris's outreachy work

150

Opened Dec 1, 2021 by ankursinha. Modified Feb 20, 2026

T: Community Low

#492 Package python-stochastic: Generate realizations of stochastic processes in python.

2

Opened Nov 19, 2021 by iztokf. Modified Feb 20, 2026

Normal

#491 Package python-devicely: A Python package for reading, timeshifting and writing sensor data

4

Opened Nov 8, 2021 by iztokf. Modified Feb 20, 2026

F: Data Analysis T: Software Normal

#488 Package hadim/read-roi: Read ROI files .zip or .roi generated with ImageJ.

5

Opened Oct 27, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: Needs documentation T: Software good first issue Low

#486 Package ipympl: Matplotlib Jupyter Extension

2

Opened Oct 27, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#79 Package pygiftiio: python gifti bindings

2

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging S: In testing T: Software Low

#78 Request package transfers from sagitter

3

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

S: Needs-commit-rights T: Community Low

#73 Package cfflib: Connectome File Format Library

2

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Inactive upstream T: Software Low

#63 Package nineML-python

3

Opened Nov 5, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: In testing T: Software Low

#59 Package libb64

2

Opened Nov 4, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#56 Package biosig

5

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#55 Package python-pybids

2

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#54 Package iv

4

Opened Nov 3, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#49 Package python-inspyred

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs review T: Software Low

#44 Package python-pyemd

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: In testing T: Software Low

#43 Package python-pyphi

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: In testing T: Software Low

#39 Package python-visionegg-quest

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: In testing T: Software Low

#38 Package python-duecredit

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: In testing T: Software Low

#35 Package Btmorph

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Utilities S: Needs packaging S: Stalled T: Software Low

#32 Package NeuroMLlite

5

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Needs packaging T: Software Low

#31 Package pyNeuroML

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Needs packaging T: Software Low

#30 Package Genesis

7

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: In testing T: Software Low

#29 Package Netpyne

5

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#28 Package MUSIC

6

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Needs review T: Software Low

#27 Package NEURON

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: In testing T: Software Low

#26 Package PyNN

13

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Needs import T: Software F34 Beta freeze 2021-02-23 Low

#25 Package Brian

3

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: In testing T: Software Low

#24 Package eFEL

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: Needs packaging T: Software Low

#23 Package pyelectro

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs documentation T: Software Low

#21 Package python-nitime

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Data Analysis S: In testing T: Software Low

#20 Package python-pyspike

7

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: In review T: Software good first issue Low

#16 Package python-nipype

15

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs packaging T: Software Low

#15 Package python-dipy

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#14 Package python-neurosynth

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging T: Documentation T: Software Low

#13 Package python-petlink

6

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#10 Package isis

9

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: Needs import S: Stalled T: Software Low

#9 Package python-nilearn

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#8 A web location for troubleshooting

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

S: Next meeting T: Community Low

#7 Package fsleyes-widgets

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#6 Package PyLEMS

1

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: In testing T: Software Low

#5 Package fsleyes-props

4

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing T: Software Low

#4 Package fslpy

2

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: In testing S: WIP T: Software Low

#3 Package fsleyes

20

Opened Nov 1, 2018 by ankursinha. Modified Feb 20, 2026

F: Neuroimaging S: WIP T: Software Low

#2 Add documentation on using the software to docs.fp.o?

6

Opened Oct 5, 2018 by ankursinha. Modified Feb 20, 2026

S: WIP T: Documentation Low

#1 Provide Nest 2.14 and 2.16 using modularity

2

Opened Oct 5, 2018 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: On hold T: Software Low

#382 Package BlueBrain/nmodl: Code Generation Framework For NEURON MODeling Language (python)

3

Opened Jul 22, 2020 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs packaging T: Software Low

#381 Document installation of CUDA for tools that use it (GENN/Tensorflow etc)

14

Opened Jul 20, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal S: Needs documentation T: Documentation good first issue Low

#380 Package chlubba/catch22: catch-22: CAnonical Time-series CHaracteristics

4

Opened Jul 18, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs review T: Software Low

#377 Package NiaOrg/NiaPy: Python microframework for building nature-inspired algorithms

3

Opened Jun 25, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs review T: Software Lowest

#374 Container images for comp-neuro packages

9

Opened Jun 16, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: In testing T: Documentation T: Software F34 Beta freeze 2021-02-23 Low

#372 Package llvmlite: A lightweight LLVM python binding for writing JIT compilers

8

Opened May 28, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging S: Waiting on upstream T: Software Low

#371 Package numba

10

Opened May 28, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging S: Waiting on upstream T: Software Low

#368 Package pypet

3

Opened May 22, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: In review T: Software Low

#366 List citation in docs

3

Opened May 18, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Documentation good first issue Low

#365 Unretire maven-jaxb2-plugin

3

Opened May 17, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs review T: Software Low

#364 Unretire jaxb2-common-basics

2

Opened May 17, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs review S: On hold T: Software Low

#363 Add "human protein atlast" to docs

2

Opened May 14, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Documentation good first issue Low

#362 Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data

2

Opened May 7, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#361 Package SpikeInterface/spiketoolkit: Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

3

Opened May 7, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#357 Package NeuroML/org.neuroml1.model: NeuroML V1 JAVA Model API

1

Opened Apr 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#356 Package NeuroML/org.neuroml.import: Import other formats into LEMS & combine with NeuroML models

1

Opened Apr 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#355 Package NeuroML/org.neuroml.export: Export from NeuroML & LEMS

1

Opened Apr 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#354 Package NeuroML/org.neuroml.model: NeuroML v2 Java API

1

Opened Apr 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Documentation Low

#353 Package NeuroML / org.neuroml.model.injectingplugin

3

Opened Apr 26, 2020 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: WIP T: Documentation Low

#351 Blog post for CompNeuro release

4

Opened Apr 25, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting S: WIP T: Blog T: Community Low

#350 Package NEAT

8

Opened Apr 8, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs packaging T: Software good first issue Low

#348 Next blog post due: Friday 4th May

6

Opened Apr 5, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog T: Community Low

#346 Package bokeh: Interactive Data Visualization in the browser, from Python

3

Opened Mar 25, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs review S: WIP T: Software Low

#343 Package sumatra

7

Opened Feb 27, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: In review S: Inactive upstream S: WIP T: Software good first issue Low

#341 Package python-autograd

7

Opened Feb 25, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs documentation Low

#340 Package numpoly: required by new chaospy version

5

Opened Feb 24, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing S: WIP T: Software

#339 Write test cases for NeuroFedora packages?

5

Opened Feb 17, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#338 LinkedIn Group Research

10

Opened Feb 14, 2020 by dan1mal. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#337 Estimating team resources: how many hours per week can you consistently spend on NeuroFedora?

12

Opened Feb 14, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#336 Use teams.fedoraproject.org (Taiga) kanban board for better planning

8

Opened Feb 6, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#335 Package alexmojaki/outdated: Check if a version of a PyPI package is outdated

3

Opened Feb 6, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs review T: Software

#333 Package: Neurotune, a package for optimizing electical models of excitable cells.

2

Opened Feb 5, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Utilities S: Needs review T: Software Low

#332 Abstract submission to CNS*2020

8

Opened Jan 13, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: WIP T: Community Low

#331 Featured applications for Comp Neuro lab

13

Opened Dec 11, 2019 by major. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting Low

#330 Banner Image for the lab webpage.

6

Opened Dec 11, 2019 by major. Modified Feb 20, 2026

F: Computational neuroscience S: Next meeting Low

#329 Screenshots of the new comp neuro lab image.

2

Opened Dec 11, 2019 by major. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting Low

#328 Summary for comp neuro lab webpage.

3

Opened Dec 11, 2019 by major. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting Low

#327 Content for Comp Neuro Lab on labs.fp.o

3

Opened Dec 10, 2019 by major. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Next meeting Low

#326 Package cyrus-/cypy: Useful utilities for Python.

3

Opened Dec 7, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#325 New software: DICOMAnonymizer

10

Opened Dec 6, 2019 by alciregi. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#324 Package pytest-env: pytest plugin used to set environment variables

4

Opened Nov 27, 2019 by major. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#323 New neurofedora@lists.fp.o mailing list for discussions only?

5

Opened Nov 26, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#322 Generate new comp-neuro ISO image

3

Opened Nov 21, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Community T: Software Low

#321 Include julia and R in the CompNeuro ISO?

5

Opened Nov 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Next meeting T: Community T: Software Low

#320 Package neuroConstruct: Software for developing biologically realistic 3D neural networks

5

Opened Nov 12, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#317 Package LEMS/jLEMS

4

Opened Nov 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: In review T: Software Low

#316 Package NeuroML/NeuroML2

2

Opened Nov 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs review T: Software Low

#315 Package NeuroML/jNeuroML

4

Opened Nov 10, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: Needs COPR import S: Needs packaging T: Software Low

#313 Package editdistance: A Fast implementation of the edit distance (Levenshtein distance) in Python

2

Opened Nov 6, 2019 by major. Modified Feb 20, 2026

D: Easy F: Utilities S: In review T: Software Low

#312 Package identify: A File identification library for Python

4

Opened Nov 1, 2019 by major. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#311 Move neuroscience planets to NeuroFedora

3

Opened Nov 1, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#310 Package pre-commit: A framework for managing and maintaining multi-language pre-commit hooks.

3

Opened Oct 29, 2019 by major. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#309 Update documentation to list the Comp Neuro ISO

2

Opened Oct 28, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting T: Documentation Low

#308 Create new Comp Neuro image after F31 release

2

Opened Oct 28, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting T: Community T: Software Low

#307 NeuroFedora at FOSDEM 2020.

7

Opened Oct 28, 2019 by major. Modified Feb 20, 2026

D: Normal S: Next meeting T: Blog T: Community Low

#306 Request commit access on octave-jsonlab from Igor

4

Opened Oct 25, 2019 by fangq. Modified Feb 20, 2026

D: Easy F: Data Analysis S: WIP T: Software Low

#303 Package graph-tool: Efficent network analysis with python

4

Opened Oct 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging T: Software Low

#302 Package MMCLAB - A GPU mesh-based Monte Carlo photon simulator for MATLAB/Octave

5

Opened Oct 10, 2019 by fangq. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Data Analysis F: Neuroimaging F: Utilities S: Needs documentation T: Software Low

#301 NeuroFedora brochure

11

Opened Oct 5, 2019 by dan1mal. Modified Feb 20, 2026

D: Normal S: Needs review S: WIP T: Community Low

#300 Package ZMat - a toolbox to enable zlib/gzip/lzma/lz4 compression in Octave

4

Opened Oct 4, 2019 by fangq. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Utilities S: In testing T: Software Low

#299 Package MCXLAB - a fast 3D Monte Carlo photon transport simulator

11

Opened Oct 4, 2019 by fangq. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Data Analysis F: Neuroimaging S: Needs documentation T: Documentation T: Software Low

#298 Package JNIfTI toolbox for Octave

2

Opened Oct 4, 2019 by fangq. Modified Feb 20, 2026

D: Easy F: Computational neuroscience F: Data Analysis F: Neuroimaging S: In testing T: Software Low

#296 Package pynetdicom

9

Opened Sep 30, 2019 by alciregi. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: In review S: WIP T: Software Low

#294 Add modelling comps group to docs

2

Opened Sep 24, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting T: Documentation Low

#293 To read: The scientific case for brain simulations

1

Opened Sep 19, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#292 A default bibliography manager for inclusion in NeuroFedora groups/image

4

Opened Sep 19, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Next meeting T: Software Low

#291 Package G-Node/python-odml: odML libraries

4

Opened Sep 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: In review T: Software Low

#290 Package Snakemake: The Snakemake workflow management system

4

Opened Sep 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Lowest

#284 Do we have an HDF5 file viewer?

5

Opened Sep 9, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#283 scidash/neuronunit: A package for data-driven validation of neuron and ion channel models using SciUnit

3

Opened Sep 9, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#282 Package sciunit: A test-driven framework for formally validating scientific models against data.

2

Opened Sep 9, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs review T: Software Low

#281 Package neurodsp-tools/neurodsp: A tool for digital signal processing for neural time series.

2

Opened Sep 5, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software Low

#280 Package dcm4che Toolkit

10

Opened Sep 3, 2019 by alciregi. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs packaging T: Software Normal

#276 Package descriptions at Fedora Package Sources

9

Opened Aug 23, 2019 by dan1mal. Modified Feb 20, 2026

D: Easy S: Next meeting S: WIP Normal

#274 Flock: conference reports

6

Opened Aug 19, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Blog T: Community Normal

#273 Please welcome @kausdev to the team!

4

Opened Aug 14, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#270 Please welcome @snavin to the team!

4

Opened Aug 12, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#269 Please welcome @bt0dotninja to the team!

4

Opened Aug 12, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#268 Please welcome @major to the team!

7

Opened Aug 12, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#267 Please welcome @dan1mal to the team

4

Opened Aug 12, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#266 Find a time for regular meetings

10

Opened Aug 8, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#265 Organise regular video team meetings

2

Opened Aug 8, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#259 Package python-matplotlib-scalebar

2

Opened Jul 21, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#258 Package python-airspeed

2

Opened Jul 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#257 Request infra for a URL for the neurofedora blog

7

Opened Jul 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog T: Community Lowest

#255 Package python-neuroCombat: Harmonizing neuroimaging data across scanners and sites

9

Opened Jul 16, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Inactive upstream S: Needs packaging T: Software Low

#252 python-glymur needed by python-fabio

10

Opened Jul 9, 2019 by lbazan. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs import T: Software Low

#250 Figure out badges rule to award badge automatically to pagure group members

8

Opened Jul 2, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal S: Future meeting S: On hold T: Community Low

#249 Next blog post: end of week 30

6

Opened Jul 1, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog Low

#248 Package python-spikeextractors

4

Opened Jun 30, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs packaging T: Software Low

#247 Provide jabref jar in COPR

4

Opened Jun 26, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#246 Policy decision: Do we or do we not support/ list non free tools in NeuroFedora (from RPMFusion, for example)?

3

Opened Jun 26, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal S: Next meeting T: Community Lowest

#245 Package PyLaTeX

3

Opened Jun 17, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs documentation S: Needs import T: Software Low

#243 Next blog post: week 26

3

Opened Jun 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog Low

#242 Fedora community science/research/academia gettogether at Flock

10

Opened May 29, 2019 by ankursinha. Modified Feb 20, 2026

T: Community Low

#241 Post announcing our poster at CNS: week 25

1

Opened May 28, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog Low

#240 Community post for next week: week 23

1

Opened May 28, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog Low

#238 Add more resources

4

Opened Apr 23, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Documentation good first issue Low

#234 hdmf needed by python-pynwb new release 1.0.1

3

Opened Mar 26, 2019 by lbazan. Modified Feb 20, 2026

D: Easy D: Normal S: In testing S: WIP Low

#232 Blog post: week 16

13

Opened Mar 25, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog Low

#231 Team meeting #2

2

Opened Mar 13, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Lowest

#228 Blog post for week 10

5

Opened Feb 17, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog Low

#227 Announce NeuroFedora on NeuroStars

2

Opened Feb 15, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#226 Blog post for 2019 week 7

3

Opened Feb 3, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog T: Community Low

#225 Package dipde

6

Opened Feb 2, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Inactive upstream S: Needs packaging T: Software Low

#224 Blog post: 2019 week 5

3

Opened Jan 28, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Blog T: Community Low

#223 NeuroFedora at Flock 2019

2

Opened Jan 27, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#222 CompNeuro spin/lab

2

Opened Jan 26, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Community F30 beta Lowest

#221 Package easyloggingpp

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: WIP T: Software Low

#219 Package lfpy: local field potentials in python

5

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: In testing S: Needs documentation T: Software Low

#212 Package smoldyn: spatial stochastic simulator for chemical reaction networks

6

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs-commit-rights T: Software Low

#211 Package PSICS: the Parallel Stochastic Ion Channel Simulator

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Normal

#210 Package STEPS: STochastic Engine of Pathway Simulation

6

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#206 Package EONS

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#204 Sponsor pac23 as co-maintainer

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#203 Request rights to COPASI

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs documentation S: Needs-commit-rights T: Software Low

#202 Package calC: calcium calculator

5

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs documentation Low

#201 Request commit rights to bionetgen

1

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs documentation S: Needs-commit-rights T: Software Low

#199 Computational neuroscience labs image

60

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

F: Computational neuroscience S: Next meeting S: WIP T: Community T: Software F31 GA 2019-10-29 Low

#198 Computational neuro comps group

33

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Next meeting T: Community T: Software F31 GA 2019-10-29

#197 Package pydeps: Python Module Dependency graphs

4

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs import S: WIP T: Software Normal

#196 Package auryn: A fast simulator for spiking neural networks with synaptic plasticity

2

Opened Jan 20, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: In testing S: Needs documentation T: Software Low

#195 python-resumable-urlretrieve

3

Opened Jan 11, 2019 by lbazan. Modified Feb 20, 2026

D: Easy F: Utilities Low

#194 Outreach: increase the team

3

Opened Jan 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Hard S: Next meeting T: Community Low

#193 Package neurom: Neuronal Morphology Analysis Tool

4

Opened Jan 11, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis S: Needs review S: Requested T: Software Low

#192 Package BluePyOpt: Blue Brain Python Optimisation Library

6

Opened Jan 7, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs packaging T: Software Low

#190 Package arbor: high-performance library for computational neurscience simulations

6

Opened Jan 7, 2019 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Software Low

#189 Poster at CNS

4

Opened Jan 4, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community CNS2019 Low

#188 Own neurofedora.org

7

Opened Jan 4, 2019 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#187 2019: Meeting 1

2

Opened Jan 2, 2019 by ankursinha. Modified Feb 20, 2026

S: Next meeting T: Community Low

#186 Package armawrap: A wrapper around Armadillo which provides a Newmat style API.

2

Opened Dec 30, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#185 Package tvb-data

3

Opened Dec 29, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: In testing T: Software Low

#184 Package tvb-geodesic

2

Opened Dec 29, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: In testing T: Software Low

#183 Package nrnmpi: neuron with mpi support

4

Opened Dec 18, 2018 by ankursinha. Modified Feb 20, 2026

D: Hard F: Computational neuroscience S: WIP T: Software Normal

#182 Package nrnpython: python bindings for neuron

3

Opened Dec 18, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs packaging T: Software

#181 Package brain2mesh

8

Opened Dec 14, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Neuroimaging S: Needs review T: Software Low

#180 Provide F28 and F29 docker images for NEST

1

Opened Dec 13, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal S: WIP T: Software Low

#179 Package boken

5

Opened Dec 13, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#175 Package datalad

6

Opened Dec 9, 2018 by mhough. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#173 Package FEniCS components

7

Opened Dec 8, 2018 by mhough. Modified Feb 20, 2026

D: Hard F: Data Analysis S: Needs packaging T: Software Low

#171 Write an octave spec template

2

Opened Dec 7, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#162 Package Nistats

3

Opened Dec 6, 2018 by mhough. Modified Feb 20, 2026

D: Easy F: Neuroimaging S: In testing T: Software Low

#161 Package brian

6

Opened Dec 6, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Software Low

#159 Package python-missingno

3

Opened Dec 3, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs documentation T: Software Low

#157 Request rights to python-pysb

2

Opened Dec 2, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs-commit-rights T: Software Low

#156 Request rights on libsbml

2

Opened Dec 2, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs-commit-rights T: Software Low

#155 Including packages that require MATLab at runtime

3

Opened Dec 2, 2018 by ankursinha. Modified Feb 20, 2026

S: Next meeting T: Community Lowest

#153 Template spec for software requiring MPI

2

Opened Dec 2, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community T: Software Low

#152 Oganizational blog on neurofedora.github.io

4

Opened Dec 2, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#146 Package iso2mesh: MATLAB/Octave-based mesh generation toolbox

9

Opened Dec 2, 2018 by mhough. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing S: Needs packaging T: Software Low

#134 Package python-spyking-circus: Fast and scalable spike sorting in python

4

Opened Nov 27, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities T: Documentation T: Software Low

#133 test

1

Opened Nov 25, 2018 by ankursinha. Modified Feb 20, 2026

Low

#128 Telegram channel and bridge to #fedora-neuro on IRC

10

Opened Nov 24, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal T: Community Low

#127 NeuroFedora swag

5

Opened Nov 24, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Community Low

#126 Package pingouin: Statistical package in Python based on Pandas

5

Opened Nov 21, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In review T: Software Low

#125 Package python-pymatreader: Convenient reader for Matlab mat files

2

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Lowest

#124 Package mne-bids

6

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging S: In testing T: Software Low

#122 Package mne-python

3

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Neuroimaging S: Needs-commit-rights T: Software Low

#121 Add comps groups

2

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community T: Software Low

#120 Build NEST with libneurosim support

3

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: WIP T: Software Low

#119 Package python-configupdater

3

Opened Nov 20, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software Low

#118 Package python-pyscaffold

3

Opened Nov 19, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#117 Package python-SAlib

5

Opened Nov 19, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#116 Package python-efel

2

Opened Nov 19, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#115 Package python-elephant

5

Opened Nov 19, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities T: Documentation T: Software Low

#114 Package chaospy

2

Opened Nov 19, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#112 Investigate the status of packages maintained by mhough

2

Opened Nov 16, 2018 by ankursinha. Modified Feb 20, 2026

T: Community Low

#111 Page listing software provided by neurofedora

2

Opened Nov 14, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy T: Documentation Low

#110 Package python-progressbar2

3

Opened Nov 11, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#109 Package python-opengl-accelerate

4

Opened Nov 11, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#108 Package python-xnat

4

Opened Nov 11, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#107 Package python-wxnatpy

4

Opened Nov 11, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs import T: Software Low

#106 Package python-indexed_gzip

2

Opened Nov 11, 2018 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: In testing T: Software Low

#101 Package spm12

15

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis S: Needs packaging S: WIP T: Software Low

#99 Package pynwb: A Python API for working with Neurodata stored in the NWB Format

2

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

F: Data Analysis S: In testing T: Software Low

#86 Request package transfers from zbyszek

3

Opened Nov 8, 2018 by ankursinha. Modified Feb 20, 2026

T: Community Low

#482 Package mechmotum/cyipopt: Cython interface for the interior point optimzer IPOPT

3

Opened Oct 26, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#478 Instructions for Outreachy candidates

50

Opened Oct 13, 2021 by ankursinha. Modified Feb 20, 2026

T: Community Low

#474 Package alizams: a DICOM viewer

6

Opened Sep 24, 2021 by alciregi. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#472 Package python-versioningit

3

Opened Sep 19, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#471 Package dandischema

14

Opened Sep 19, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#468 Package python-pybv: A lightweight I/O utility for the BrainVision data format

4

Opened Sep 13, 2021 by major. Modified Feb 20, 2026

D: Easy F: Neuroimaging T: Software Low

#467 Package python-shybrid: A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

2

Opened Sep 13, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs documentation T: Software Low

#465 Package python-hdf5storage: Utilities to read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files.

3

Opened Sep 13, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#464 Package python-exdir: Directory structure standard for experimental pipelines

3

Opened Sep 13, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#460 Welcome to the team, Shane!

4

Opened Aug 16, 2021 by ankursinha. Modified Feb 20, 2026

T: Community Low

#455 Tracker/discussion ticket for talk at nest

6

Opened Jul 26, 2021 by ankursinha. Modified Feb 20, 2026

T: Community T: Outreach and dissemination Low

#452 Package python-connection_pool: Thread-safe connection pool

1

Opened Jun 19, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#451 Package python-stopit: Raise asynchronous exceptions in other threads and more

2

Opened Jun 18, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#447 Package python-smart_open: Utils for streaming large files (S3, HDFS, gzip, bz2, and more)

2

Opened May 17, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#446 Package libsonata

3

Opened May 2, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs review T: Software Low

#445 Package bluepysnap

2

Opened May 2, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#444 Action required: CompNeuroFedora showcase at CNS*2021 abstract needs review (due May 15)

4

Opened Apr 30, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Community T: Outreach and dissemination Lowest

#443 Package dandi: Command line client for interaction with DANDI archive elements

3

Opened Apr 27, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging T: Software Low

#442 Package gsl-lite

3

Opened Apr 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: In review T: Software Low

#441 Package lexerctl: The Modular Lexical Analyser Generator

2

Opened Apr 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Utilities S: Needs packaging T: Software Low

#440 Package HighFive: Header-only C++ HDF5 interface

3

Opened Apr 17, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: In review T: Software Low

#439 Package BlueBrain/morph-tool: A toolbox for morphology editing. It aims to provide small helper programs that perform simple tasks.

2

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#438 Package BlueBrain/MorphIO: A python and C++ library for reading and writing neuronal morphologies

3

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs review T: Software Low

#432 Please welcome @anilbey to the neuro-sig package maintainers group!

5

Opened Apr 15, 2021 by ankursinha. Modified Feb 20, 2026

T: Community Low

#431 Package plotly: An open-source, interactive data visualization library for Python

3

Opened Apr 14, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs review T: Software Low

#430 Slides for INCF Assembly (due 12th April)

4

Opened Apr 8, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy T: Outreach and dissemination Low

#429 Package pawamoy/git-changelog: Automatic Changelog generator using Jinja2 templates.

3

Opened Apr 8, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#428 Package python-pyunicorn

3

Opened Mar 30, 2021 by iztokf. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: In testing S: Needs documentation T: Software Low

#427 Action needed: abstract for submission to INCF ineuroinformatics assembly (due 31st March!)

12

Opened Feb 25, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community T: Outreach and dissemination Low

#425 Package amply: A Python package for AMPL/GMPL datafile parsing

3

Opened Feb 16, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs review T: Software Low

#424 Package PuLP: A python Linear Programming API

1

Opened Feb 16, 2021 by major. Modified Feb 20, 2026

D: Easy F: Utilities T: Software Low

#423 Package FastTrack: a cross-platform application designed to track multiple objects in video recording.

7

Opened Feb 16, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Neuroimaging F: Utilities S: Needs packaging S: RPM Fusion T: Software Low

#422 Welcome to the team @nerdsville!

6

Opened Feb 11, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#421 Use pluto instead of venus for planets?

9

Opened Feb 7, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal S: Next meeting T: Community T: Documentation good first issue Low

#420 Welcome to the team @harshmangal

1

Opened Feb 3, 2021 by ankursinha. Modified Feb 20, 2026

T: Community Low

#419 Welcome to the team @harshmangal

9

Opened Feb 3, 2021 by ankursinha. Modified Feb 20, 2026

T: Community Low

#418 Software/tools for data analysis

3

Opened Jan 27, 2021 by iztokf. Modified Feb 20, 2026

D: Easy F: Data Analysis T: Documentation Low

#417 Welcome to the community, henryburgess!

15

Opened Jan 19, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#415 Add NeuroML to comp-neuro Fedora page

8

Opened Jan 6, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy S: WIP T: Documentation F34 Beta freeze 2021-02-23 Lowest

#414 Add PyNN to comp-neuro fedora image

2

Opened Jan 6, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Software F34 Beta freeze 2021-02-23 Lowest

#413 Add PyNN to featured apps lab web page

3

Opened Jan 6, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs documentation S: WIP T: Documentation F34 Beta freeze 2021-02-23 Lowest

#412 Add NetPyNE to featured apps web page

8

Opened Jan 6, 2021 by ankursinha. Modified Feb 20, 2026

D: Easy S: Needs documentation S: WIP T: Documentation F34 Beta freeze 2021-02-23 Lowest

#411 Comp-neuro container image to go along with the live media

4

Opened Jan 5, 2021 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience T: Community T: Software Low

#410 Update settings for Matrix channel

2

Opened Nov 24, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Community Low

#409 Add Matrix channel to blog + docs

2

Opened Nov 24, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy S: Needs documentation S: Next meeting T: Community Low

#408 Package rdflib-jsonld

2

Opened Nov 21, 2020 by major. Modified Feb 20, 2026

D: Easy T: Software Low

#405 Package OWL-RL

1

Opened Nov 2, 2020 by major. Modified Feb 20, 2026

D: Easy S: Bad licence T: Software Low

#403 Please welcome @iztokf to the team!

3

Opened Oct 19, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#402 Please welcome @ramyaparimi to the team!

4

Opened Oct 19, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy T: Community Low

#401 Package pyplane: Phase plane analysis of nonlinear systems

26

Opened Oct 13, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Utilities S: Needs packaging T: Software good first issue Low

#400 Package mod2c: Converter for mod files to C code

2

Opened Oct 9, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#399 Update NEST documentation page

2

Opened Oct 9, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience T: Documentation Low

#395 Package bokeh: Interactive Data Visualization in the browser, from Python

2

Opened Sep 15, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Data Analysis F: Utilities S: Needs packaging T: Software Low

#393 Why are we maintaining PEGTL?

3

Opened Sep 8, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy S: Next meeting T: Software Low

#392 FOSDEM 2021 Tracker

3

Opened Sep 7, 2020 by major. Modified Feb 20, 2026

T: Community Low

#390 Package python-toposort

2

Opened Aug 20, 2020 by major. Modified Feb 20, 2026

D: Normal F: Utilities T: Software Low

#389 Package python-ratelimiter

2

Opened Aug 20, 2020 by major. Modified Feb 20, 2026

D: Normal F: Utilities T: Software Low

#388 Package python-datrie

2

Opened Aug 20, 2020 by major. Modified Feb 20, 2026

D: Normal F: Utilities T: Software Low

#387 Package BlueBrain/CoreNeuron: Simulator optimized for large scale neural network simulations.

2

Opened Aug 20, 2020 by ankursinha. Modified Feb 20, 2026

D: Normal F: Computational neuroscience S: Needs packaging T: Software Low

#385 Package python-libneuroml

2

Opened Aug 7, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: Needs COPR import T: Software Low

#384 Set up "identity" subpackage in Fedora release for comp-neuro spin

2

Opened Aug 5, 2020 by ankursinha. Modified Feb 20, 2026

D: Easy F: Computational neuroscience S: WIP T: Community Lowest

neuro-sig / NeuroFedora

Issues
242 Open 339 Closed

neuro-sig / NeuroFedora

Issues 242 Open 339 Closed

Issues
242 Open 339 Closed