Software packaging
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Backlog (65)
- #398 - Package NeurodataWithoutBorders/nwb-jupyter-widgets: Explore the...
- #297 - Package netypyne-UI
- #352 - Package phy: interactive visualization and manual spike sorting of...
- #435 - Package FlyBrainLab/FBLClient: FBLClient is a Python package that implements...
- #434 - Package FlyBrainLab components
- #437 - Package FlyBrainLab/Neuroballad
- #57 - Package FSL
- #450 - Package psyneulink: A block modeling system for cognitive neuroscience
- #463 - Package VND: neuronal visualization program
- #216 - Package gepetto: web based platform to build neuroscience applications
- #370 - Package nwb-explorer
- #239 - Should we unretire (adopt) freemind?
- #17 - Package suite2p
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#470
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- Package lukelbd/proplot: 🎨 A powerful matplotlib wrapper for making...
- #469 - Package Klusters/Neuroscope/NDManager: Free Data Visualization and...
- #378 - Package SpikeInterface/spikely: A GUI for running popular spike sorting...
- #349 - Package ctlee/gamer: Geometry-preserving Adaptive Mesher
- #476 - Package Anipose
- #475 - Package: Whitlock-Group/TRACER: A toolkit to register and visualize...
- #369 - Create neuro-imaging packaging group
- #286 - Package flatironinstitute/CaImAn: Computational toolbox for large scale...
- #406 - Package brainets/frites: Framework for Information Theoretical analysis of...
- #486 - Package ipympl: Matplotlib Jupyter Extension
- #487 - Package autoreject/autoreject: Automated rejection and repair of bad...
- #358 - Package betterbib: Update BibTeX files with info from online resources.
- #287 - Package rochefort-lab/fissa: A Python toolbox for Fast Image Signal...
- #277 - Package pymanopt: a Python toolbox for optimization on manifolds
- #251 - python-fabio needed by python-silx
- #305 - Package napari/napari: napari: a fast, interactive, multi-dimensional image...
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#498
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- Package python-formulaic: An implementation of Wilkinson formulas.
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#490
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- Package python-pooch: A friend to fetch your data files
- #500 - Package Donders-Institute/bidscoin: BIDScoin converts your source-level...
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#499
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- Package python-pooch: A friend to fetch your data files
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#502
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#503
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- Package python-pep440
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#497
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- #41 - Package python-neuroshare
- #511 - Package sonpy: The Python interface to the 64-bit Son library
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#512
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- #523 - Package genepy3D: a python library for quantitative geometry,
- #525 - Package graphia: visual analytics application developed to aid the...
- #522 - Package ipympl: matplotlib extension for jupyter
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#514
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- Package scikit-plot: An intuitive library to add plotting functionality to...
- #479 - Package myst-parser - An extended commonmark compliant parser, with bridges...
- #526 - Package kaleido: Static image export for web-based visualization libraries...
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#10
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- #11 - Package itktools
- #65 - Package SpineCreator
- #12 - Package python-dmri-commit
- #233 - Package SpiNNaker tools
- #42 - Package python-expyriment
- #52 - Package nix
- #53 - Package NixView
- #71 - Package afni: Analysis of Functional NeuroImages
- #158 - Package FiPy
- #253 - python-silx Software library for X-ray data analysis
- #97 - Package psignifit:
- #168 - Package PyPNS: A Python Peripheral Nerve Simulator
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#255
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- Package python-neuroCombat: Harmonizing neuroimaging data across scanners and sites
- #342 - Package vispy
- #90 - Package mrtrix3: a set of tools to perform various types of diffusion MRI analyses
- #174 - Package python-pactools
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#343
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- Package sumatra
- #279 - Package medInria: a multi-platform medical image processing and...
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#82
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- Package ismrmrd: ISMRM Raw Data Format
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Triaged (23)
- #449 - Package MIIND
- #113 - Package D3D: Java-based 3D reaction-diffusion simulator
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#283
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#33
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#101
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- #376 - Package brian2tools
- #426 - Package genn-team/genn: GeNN is a GPU-enhanced Neuronal Network simulation...
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#453
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- #457 - Package rgobi
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#468
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#333
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#49
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#458
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#350
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- #473 - Package spikeinterface: module for creating flexible and robust spike...
- #396 - Package pypesto: Parameter EStimation TOolbox for python
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#252
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- #304 - Package pynrrd
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#488
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- Package hadim/read-roi: Read ROI files .zip or .roi generated with ImageJ.
- #483 - Package fides-dev/fides: Trust Region Optimization in Python
- #394 - Package alejoe91/MEArec: Fast and customizable of extracellular recordings on MEA
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#482
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- Package mechmotum/cyipopt: Cython interface for the interior point optimzer IPOPT
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#491
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In Progress (13)
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#471
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#433
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- Package iqr: simulator for large scale neural systems
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#443
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- #314 - Package dcmstack: DICOM to Nifti conversion with meta data preservation
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#439
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- #382 - Package BlueBrain/nmodl: Code Generation Framework For NEURON MODeling...
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#445
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- #456 - Package ggobi
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#429
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- #466 - Package python-mearec: Fast and customizable simulation of extracellular...
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#501
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#528
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- Package python-plotnine: A grammar of graphics for python
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#123
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- Package mne-cpp
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In Review (1)
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QA (0)
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Docs pending (0)
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Done (45)
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Blocked (3)
- Package alizams: a DICOM viewer