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https://kojipkgs.fedoraproject.org/compose//rawhide/Fedora-Rawhide-20160930.n.2/work/ostree-1/config_repo/fedora-rawhide.repo has inside it baseurl=http://kojipkgs.fedoraproject.org/compose//rawhide/Fedora-Rawhide-20160930.n.2/compose/Everything/x86_64/os which is put there by pungi
it should be baseurl=http://kojipkgs.fedoraproject.org/compose//rawhide/Fedora-Rawhide-20160930.n.2/compose/Everything/$basearch/os
@lsedlar changed the status to Fixed
Fixed
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