https://pagure.io/koji/pull-request/498#request_diff contains in the end mention of four files as 'The removed file is too large to be shown here, see it at: xy'. Anyway, they are modified but still present in PR's branch.
I'm see one about koji/ssl/Makefile which I'm not seeing in https://pagure.io/fork/tkopecek/koji/blob/issue467/f/koji
koji/ssl/Makefile
tests/test_lib_py2only/test_compatrequests.py seems to also be gone in https://pagure.io/fork/tkopecek/koji/blob/issue467/f/tests/test_lib_py2only
tests/test_lib_py2only/test_compatrequests.py
However, the changes to kojira, koji-gc and koji-shadow at the bottom are indeed still present :(
Metadata Update from @pingou: - Issue tagged with: bug
Looking at the PR it seems to be fixed now.
Let's re-open if we face it again.
Thanks for your ticket!
Metadata Update from @pingou: - Issue close_status updated to: Fixed