PR#18: Document a few packages - neuro-sig/documentation

Benjamin A. Beasley • 2 years ago

02aae65

Benjamin A. Beasley • 2 years ago

ffd7f19

Benjamin A. Beasley • 2 years ago

63dfd31

Benjamin A. Beasley • 2 years ago

f2f08cf

modules/ROOT/pages/analysis-tools.adoc

file modified

		`@@ -26,6 +26,10 @@`
		\| `sudo dnf install python3-contextualbandits`
		`\| Python implementations of contextual bandits algorithms.`

		`+ \| link:https://src.fedoraproject.org/rpms/python-cyipopt[cyipopt]`
		+ \| `sudo dnf install python3-cyipopt`
		`+ \| Cython interface for the interior point optimzer IPOPT.`
		`+`
		`\| link:https://src.fedoraproject.org/rpms/python-editdistance[editdistance]`
		\| `sudo dnf install python3-editdistance`
		`\| A fast implementation of the edit distance (Levenshtein distance) in Python.`
		`@@ -142,6 +146,10 @@`
		\| `sudo dnf install python3-spyking-circus{-mpich,-openmpi}`
		`\| A fast and scalable solution for spike sorting of large-scale extracellular recordings.`

		`+ \| link:https://src.fedoraproject.org/rpms/python-trimesh[trimesh]`
		+ \| `sudo dnf install python3-trimesh`
		`+ \| Import, export, process, analyze and view triangular meshes.`
		`+`
		`\|===`

		`Software that is in the queue for inclusion is listed link:https://pagure.io/neuro-sig/NeuroFedora/issues?tags=F%3A+Data+Analysis[here].`

modules/ROOT/pages/excludedtools.adoc

file modified

		`@@ -30,4 +30,10 @@`
		`\| In line with the Fedora communities link:https://docs.fedoraproject.org/en-US/project/[foundations], NeuroFedora does not include any link:https://fedoraproject.org/wiki/Forbidden_items?rd=ForbiddenItems[proprietary software].`
		`\| Users may install the CUDA from the official Nvidia repositories as link:https://rpmfusion.org/Howto/CUDA[documented here].`

		`+ \| Triangle`
		`+ \| Johnathan Richard Shewchuk’s link:http://www.cs.cmu.edu/~quake/triangle.html[Triangle] library, a two-dimensional quality mesh generator and Delaunay triangulator.`
		`+ \| The software is non-free because its license contains field-of-use restrictions.`
		`+ In line with the Fedora communities link:https://docs.fedoraproject.org/en-US/project/[foundations], NeuroFedora does not include any link:https://fedoraproject.org/wiki/Forbidden_items?rd=ForbiddenItems[proprietary software].`
		`+ \| The library is source-available, and is free of charge for “private, research, and institutional use”, so some users may be able to compile from source without obtaining a paid license.`
		`+`
		`\|===`

modules/ROOT/pages/utilities.adoc

file modified

		`@@ -31,6 +31,10 @@`
		\| `sudo dnf install python3-datrie`
		`\| Super-fast, efficiently stored Trie for Python.`

		`+ \| link:https://src.fedoraproject.org/rpms/earcut-hpp[earcut.hpp]`
		+ \| `sudo dnf install earcut-hpp-devel`
		`+ \| C++ port of earcut.js, a fast, header-only polygon triangulation library.`
		`+`
		`\| link:https://src.fedoraproject.org/rpms/edflib[edflib]`
		\| `sudo dnf install edflib`
		`\| C/C++ library to read/write EDF+ and BDF+ files.`
		`@@ -79,6 +83,10 @@`
		\| `sudo dnf install python3-llvmlite`
		`\| A lightweight LLVM-Python binding for writing JIT compilers.`

		`+ \| link:https://src.fedoraproject.org/rpms/python-mapbox-earcut[mapbox-earcut]`
		+ \| `sudo dnf install python3-mapbox-earcut`
		`+ \| Very fast and quite robust triangulation of 2D polygons.`
		`+`
		`\| link:https://src.fedoraproject.org/rpms/python-missingno[missingno]`
		\| `sudo dnf install python3-missingno`
		`\| Missing data visualization module for Python.`

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		`@@ -26,6 +26,10 @@`
		\| `sudo dnf install python3-contextualbandits`
		`\| Python implementations of contextual bandits algorithms.`

		`+ \| link:https://src.fedoraproject.org/rpms/python-cyipopt[cyipopt]`
		+ \| `sudo dnf install python3-cyipopt`
		`+ \| Cython interface for the interior point optimzer IPOPT.`
		`+`
		`\| link:https://src.fedoraproject.org/rpms/python-editdistance[editdistance]`
		\| `sudo dnf install python3-editdistance`
		`\| A fast implementation of the edit distance (Levenshtein distance) in Python.`
		`@@ -142,6 +146,10 @@`
		\| `sudo dnf install python3-spyking-circus{-mpich,-openmpi}`
		`\| A fast and scalable solution for spike sorting of large-scale extracellular recordings.`

		`+ \| link:https://src.fedoraproject.org/rpms/python-trimesh[trimesh]`
		+ \| `sudo dnf install python3-trimesh`
		`+ \| Import, export, process, analyze and view triangular meshes.`
		`+`
		`\|===`

		`Software that is in the queue for inclusion is listed link:https://pagure.io/neuro-sig/NeuroFedora/issues?tags=F%3A+Data+Analysis[here].`

		`@@ -30,4 +30,10 @@`
		`\| In line with the Fedora communities link:https://docs.fedoraproject.org/en-US/project/[foundations], NeuroFedora does not include any link:https://fedoraproject.org/wiki/Forbidden_items?rd=ForbiddenItems[proprietary software].`
		`\| Users may install the CUDA from the official Nvidia repositories as link:https://rpmfusion.org/Howto/CUDA[documented here].`

		`+ \| Triangle`
		`+ \| Johnathan Richard Shewchuk’s link:http://www.cs.cmu.edu/~quake/triangle.html[Triangle] library, a two-dimensional quality mesh generator and Delaunay triangulator.`
		`+ \| The software is non-free because its license contains field-of-use restrictions.`
		`+ In line with the Fedora communities link:https://docs.fedoraproject.org/en-US/project/[foundations], NeuroFedora does not include any link:https://fedoraproject.org/wiki/Forbidden_items?rd=ForbiddenItems[proprietary software].`
		`+ \| The library is source-available, and is free of charge for “private, research, and institutional use”, so some users may be able to compile from source without obtaining a paid license.`
		`+`
		`\|===`

		`@@ -31,6 +31,10 @@`
		\| `sudo dnf install python3-datrie`
		`\| Super-fast, efficiently stored Trie for Python.`

		`+ \| link:https://src.fedoraproject.org/rpms/earcut-hpp[earcut.hpp]`
		+ \| `sudo dnf install earcut-hpp-devel`
		`+ \| C++ port of earcut.js, a fast, header-only polygon triangulation library.`
		`+`
		`\| link:https://src.fedoraproject.org/rpms/edflib[edflib]`
		\| `sudo dnf install edflib`
		`\| C/C++ library to read/write EDF+ and BDF+ files.`
		`@@ -79,6 +83,10 @@`
		\| `sudo dnf install python3-llvmlite`
		`\| A lightweight LLVM-Python binding for writing JIT compilers.`

		`+ \| link:https://src.fedoraproject.org/rpms/python-mapbox-earcut[mapbox-earcut]`
		+ \| `sudo dnf install python3-mapbox-earcut`
		`+ \| Very fast and quite robust triangulation of 2D polygons.`
		`+`
		`\| link:https://src.fedoraproject.org/rpms/python-missingno[missingno]`
		\| `sudo dnf install python3-missingno`
		`\| Missing data visualization module for Python.`