Issues - neuro-sig/NeuroFedora

#374 Container images for comp-neuro packages

1

Opened 2 months ago by ankursinha. Modified a month ago

T: Software T: Documentation S: Needs import F: Computational neuroscience D: Normal good first issue Normal

#381 Document installation of CUDA for tools that use it (GENN/Tensorflow etc)

10

Opened a month ago by ankursinha. Modified 18 days ago

T: Documentation D: Normal S: Needs documentation good first issue Normal

#285 Do we have the required imagej plugins for neuron tracing?

Opened 11 months ago by ankursinha. Modified 11 months ago

T: Software F: Neuroimaging D: Normal Normal

#62 Package 9ML-toolkit

1

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#367 Package adamreeve/npTDMS: NumPy based Python module for reading TDMS files produced by LabView

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

#71 Package afni: Analysis of Functional NeuroImages

3

Opened 2 years ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#289 Package AlexEMG/DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals, including humans

Opened 11 months ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#362 Package AllenInstitute/AllenSDK: code for reading and processing Allen Institute for Brain Science data

Opened 3 months ago by ankursinha. Modified 3 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#70 Package ants: Advanced Normalization Tools (ANTs)

3

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#137 Package BASIL: Bayesian Inference for Arterial Spin Labeling MRI

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal High

#214 Package bdtoolbox: brain dynamics toolbox

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#375 Package Bioconductor - bigPint

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#229 Package biojava/biojava: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

1

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#215 Package bmtk: Brain Modeling Toolkit

4

Opened 2 years ago by ankursinha. Modified 3 months ago

T: Software F: Computational neuroscience D: Normal Normal

#346 Package bokeh: Interactive Data Visualization in the browser, from Python

Opened 5 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Data Analysis F: Utilities D: Normal Normal

#144 Package brainageR

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#271 Package brainiak: Brain Imaging Analysis Kit

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#345 Package Brainrender

Opened 5 months ago by ankursinha. Modified 5 months ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#376 Package brian2tools

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Data Analysis F: Utilities D: Normal Normal

#262 Package c3d: a command-line tool for converting 3D images between common file formats.

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#151 Package camino

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#208 Package cellblender: Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#359 Package cellfinder: Automated 3D cell detection and registration of whole-brain images

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis F: Utilities D: Normal Normal

#380 Package chlubba/catch22: catch-22: CAnonical Time-series CHaracteristics

1

Opened a month ago by ankursinha. Modified a month ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#163 Package ConnectopicMapping

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#349 Package ctlee/gamer: Geometry-preserving Adaptive Mesher

1

Opened 4 months ago by ankursinha. Modified 4 months ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#175 Package datalad

1

Opened 2 years ago by mhough. Modified a year ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#165 Package DUNE Numerics

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#169 Package Dynare

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#205 Package ecell

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#135 Package eddy: a tool for correcting eddy currents and movements in diffusion data

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#230 Package edlut

1

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Low

#319 Package Ermentrout/xppaut: General differential equation solver and bifurcation package

Opened 9 months ago by ankursinha. Modified 9 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Utilities D: Normal Normal

#172 Package esig

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#140 Package FABBER

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#139 Package FEAT

Opened 2 years ago by ankursinha. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#158 Package FiPy

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: WIP F: Data Analysis D: Normal Normal

#130 Package FIX

3

Opened 2 years ago by mhough. Modified a year ago

S: Needs packaging F: Neuroimaging D: Normal Normal

#286 Package flatironinstitute/CaImAn: Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Opened 11 months ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Computational neuroscience F: Data Analysis D: Normal Normal

#142 Package Forward: Realistic EEG forward modeling

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#261 Package freesurfer: An open source software suite for processing and analyzing (human) brain MRI images.

3

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#235 Package Genesis3/Neurospaces

3

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#373 Package GHFC/HyPyP: The Hyperscanning Python Pipeline

Opened 2 months ago by ankursinha. Modified 2 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal good first issue Normal

#164 Package GPy

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#145 Package HNN: Human Neocortical Neurosolver

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Computational neuroscience D: Normal Normal

#132 Package ICA-AROMA

Opened 2 years ago by mhough. Modified 2 years ago

T: Software S: Needs packaging F: Neuroimaging D: Normal Normal

#383 Package JASP: Graphical Statistical Software for Common Statistical Designs

Opened 16 days ago by ankursinha. Modified 16 days ago

T: Software S: Needs packaging F: Data Analysis D: Normal S: Needs documentation good first issue Normal

#295 Package jpgill86/neurotic: Curate, visualize, annotate, and share your behavioral ephys data using Python

Opened 11 months ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Data Analysis D: Normal Normal

#244 Package k2pdfopt

1

Opened a year ago by ankursinha. Modified a year ago

T: Software S: Needs packaging F: Utilities D: Normal Normal

#288 Package KNOSSOS — 3D Image Annotation

Opened 11 months ago by ankursinha. Modified 11 months ago

T: Software S: Needs packaging F: Neuroimaging F: Data Analysis D: Normal Normal

neuro-sig / NeuroFedora

Issues
198 Open 186 Closed

neuro-sig / NeuroFedora

Source Code

Issues 198 Open 186 Closed

Issues
198 Open 186 Closed