BaseTools: Correct report the line number in INF file issue
    
    REF: https://bugzilla.tianocore.org/show_bug.cgi?id=3127
    
    If one protocol is not found in package dec file, Build will report the
    error message that module.inf(-1): error 4000: Value of Protocol
    [gXxxProtocolGuid] is not found under [Protocols] section in MdePkg.dec.
    
    Here, -1 should be the line number of this protocol in module INF file.
    
    Cc: Bob Feng <bob.c.feng@intel.com>
    Cc: Liming Gao <gaoliming@byosoft.com.cn>
    Cc: Yuwei Chen <yuwei.chen@intel.com>
    Signed-off-by: Yunhua Feng <fengyunhua@byosoft.com.cn>
    Reviewed-by: Liming Gao <gaoliming@byosoft.com.cn>
    Reviewed-by: Bob Feng <bob.c.feng@intel.com>